Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2768 ATGTCTTCAAGCAATGGCCGTGCTGCCAGTGAAATCTTTAAAGGCCAAGCTCTCGTATACAGACACCTATTTGCCTTTGAAAATTCCATGTCTCTTAAATGGATCGTCGAGTTGGGCATACCAGACATAATCCACAACCATGGCCACCCCATAACCCTTTCAAATTTGGTGTCAATTTTGCAAATTCCACAAGAAAAGATCGGTAACGTGCGTCGTCTCATGCGCTACCTCGCACACAATGGATTCTTCGAAATCGTAAGAATCCATGAAGACCAAGAAGAGAAGGAAGCATATGCTCTCACTCCTGCATCAGAGCTTCTTGTCAAAAGCAGTGACATGTGTTTAGCTCCAATGGTTGAGTGCATTCTTGACCCAACTTTGTCAGGCTCATACCATTTGTTGAAGGAGTGGATCTATGAAAAAGATAAGACACTATTCAACGTCTCATTGGGATCTGATATATGGGATTTTCTTCAGAAAAATCCTTCATATAATAGCATATTCAATGAGGCAATGGCCAGTGATTCTCGAGTGTTAAACTTGGGACTGAGAGATTGCAATTCGGTCTTTGCGGAATTGGAATGTGTGGTGGATGTTGGTGGTGGAACCGGAACCACGGCTAAGATTCTCTGTGAGAAATTTCCTAACTTGAAATGCATAGTGTTTGATCGTCCACAGGTTGTGGAAAACTTGTCCGGAAGCAATAATGTGAGTTATGTTGGTGGGGACATGTTTCAATCCATTCCTAAGGCTGATGCAGTTCTACTTAAGTTGATTTTGCATGACTGGATTGATAAGGATTGCATAAAGATATTGCAAAAATGTAAGGAAGCTATTTCAGATAATGGGGAAAAGGGAAAAGTGATTGTCATAGACATTGTGATAAATGAAAAGCAAGAAGAGCACGAAATTACTGGAACGAAGCTGCTTATGGATGTGAACATGGCAAGTCTTAATGGAAAAGAGAGAGATGAACAAGAGTGGAAGAAACTCTTCCTGGAATCAGGCTTCAAAGACTACAAAATTTCTCCTTTGACTGGATTGTTGTCTCTTATTGAGATATATCCTTAA 1071 0.4062 MSSSNGRAASEIFKGQALVYRHLFAFENSMSLKWIVELGIPDIIHNHGHPITLSNLVSILQIPQEKIGNVRRLMRYLAHNGFFEIVRIHEDQEEKEAYALTPASELLVKSSDMCLAPMVECILDPTLSGSYHLLKEWIYEKDKTLFNVSLGSDIWDFLQKNPSYNSIFNEAMASDSRVLNLGLRDCNSVFAELECVVDVGGGTGTTAKILCEKFPNLKCIVFDRPQVVENLSGSNNVSYVGGDMFQSIPKADAVLLKLILHDWIDKDCIKILQKCKEAISDNGEKGKVIVIDIVINEKQEEHEITGTKLLMDVNMASLNGKERDEQEWKKLFLESGFKDYKISPLTGLLSLIEIYP* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2768 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 354 IPR029063 -
Lja1g2768 356 PANTHER O-METHYLTRANSFERASE 2 355 IPR016461 GO:0008168
Lja1g2768 356 PIRSF O-mtase 1 356 IPR016461 GO:0008168
Lja1g2768 356 Gene3D - 1 107 IPR036388 -
Lja1g2768 356 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Lja1g2768 356 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Lja1g2768 356 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 2 355 - -
Lja1g2768 356 Pfam O-methyltransferase domain 131 338 IPR001077 GO:0008171
Lja1g2768 356 Gene3D Vaccinia Virus protein VP39 108 356 IPR029063 -
Lja1g2768 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 356 IPR016461 GO:0008168
Lja1g2768 356 CDD AdoMet_MTases 196 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2768 Lja-Chr1 33132639 33134859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2768 30 342 Monolignol Biosynthesis Gene Families AT5G54160 32.500 2.56e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2768 K22588 K13262 ag:AAC49926 539.265