Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2763 ATGAGAGACACACAAGATGATTATAAGATCCCAAAAGAAGCAGATAATATTCCACTGAAACTGGAGGGTCATTCAAGTGATGATCATGAAAAACCAAAGCCTCCATCAGCATCAACATCACCAGCACAATGGTCAAGGCTTAAGGATCCAAGGATTGTTAGAGTTTCCAGAGCCTTTGGAGGAAAAGACAGGCACAGCAAGGTTTGCACAATAAGAGGGTTAAGAGACAGGCGGGTGAGGCTATCAGTGCCAACAGCTATTCAATTATATGACCTTCAAGACAGGCTAGGGCTCAACCAACCAAGCAAGGTTGTTGATTGGTTGCTCAATGTAGCTAAGCATGAAATTGATGAACTCCCACCACTCCCAAATTTTCCACAACCAGGCAACTTCACTTTTAGTGGCTATCCATCTTCTCTTATTACTCCTCATCATCATGAAGCTAACACCGCATCTCAGAGTAATGAACAACTACAGTTTCATGAACGGGAAGGAACATCTGTCAGAGGCCAAAAAATGAGTAAGGAACAACTTTTCAACATCAATAGAAGTGGGAATGTTGACCAGTGGGAAGGTTCAAGCCAAAATTCTATGTGGAAATTGAAGGCTAAAGAAGTTTCAGAAGAATTGGTCACTGATAAAGAAAATTGGATGAATAAGCAAGGAAGCAACAACAATGAAGGTGGTAGTGCACATGTTTTACCAAATAATTTACAAAGAGCCAATCATTATCCTTCATTCCTTGGCTTGTTGAATAATATGCCACTTGGCTATGCCTATAACCAATGGGAGAATTCAGGTGGTGTTAATTCTCAACTGGGAGGAAACCATGGATTTTCAAACCAAACAAACATTAGTGTTGTGCCTTTCCCATCAACATTGGCTTTGTCAACTGGGAATTCTCAAATTTCACAGTCCTATATTCCTTCACATGTTACAGCAATGGATGTGGATCAAAGGCAAATCAACCACTATCAGATGTTAAGTTTGAGTTCTCAAAATCTGTTAGTGAATAATTCTCTCAATCCATCTTTCAGCTTGGCTATGATGACTCCTAGGCTTCTCCATTCTCCCAACAGCAATGAAAACCCATCATCATCACATAGAGACCAAGATTTCACTTCCAAGTAA 1131 0.4023 MRDTQDDYKIPKEADNIPLKLEGHSSDDHEKPKPPSASTSPAQWSRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNVAKHEIDELPPLPNFPQPGNFTFSGYPSSLITPHHHEANTASQSNEQLQFHEREGTSVRGQKMSKEQLFNINRSGNVDQWEGSSQNSMWKLKAKEVSEELVTDKENWMNKQGSNNNEGGSAHVLPNNLQRANHYPSFLGLLNNMPLGYAYNQWENSGGVNSQLGGNHGFSNQTNISVVPFPSTLALSTGNSQISQSYIPSHVTAMDVDQRQINHYQMLSLSSQNLLVNNSLNPSFSLAMMTPRLLHSPNSNENPSSSHRDQDFTSK* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2763 376 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 368 IPR005333 GO:0003700
Lja1g2763 376 MobiDBLite consensus disorder prediction 1 47 - -
Lja1g2763 376 MobiDBLite consensus disorder prediction 143 161 - -
Lja1g2763 376 MobiDBLite consensus disorder prediction 143 170 - -
Lja1g2763 376 MobiDBLite consensus disorder prediction 354 376 - -
Lja1g2763 376 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 13 368 - -
Lja1g2763 376 Pfam TCP family transcription factor 61 203 IPR017887 -
Lja1g2763 376 ProSiteProfiles TCP domain profile. 61 119 IPR017887 -
Lja1g2763 376 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2763 Lja-Chr1 33015082 33017301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2763 31 141 TCP Transcription Factor Family AT3G02150 70.270 3.22e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja1g2763 TCP 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2763 - - var:108327895 369.777