Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2757 ATGGATGAGATAAATAATGATGATTCATCTTCTATGCCATCTCATATGTGCCGCTACTTCACAATGAGACACATCAGAGCTGCAACAAACAACTTCGATGATGTTTTCATCATAGGGGTTGGAGGGTTCGGAAACATGTACAAAGGCTACATCGACCGAGGGTCCACACCAGTTGCGATCAAACGCCTTAAACCTGGTTCTCAGCAAGGAGAGGACGAGTTCTTGAACGAGATCGAAATGCTCTCTCAACTCTGTCACGTTCATTTGGTGTCCCTAATCAGTTACTGCAATGACGGCGCCGAGACGATTCTCGTCTACGATTTCATGCAACACGGTAGTCTCAGCGATTGGATCCACCGCTCTTATAATAACAACAATAACCACCTTCTCACATGGAAGCAGAGGCTGGATTATCTCCACACCAGTGGAAAGCACAATATCATTCACCGCGACGTGAAGAGCACGAATATATTTTTGGATGAGAAATGGGTGGCGAAAGTTTCAGATTTCGGTTTGTCCAAAGTGGGCCCCACGGGAATATCGAAGACACACATCAGCACAATTGTGAAAGGGAGCCTTGAGTATTTGGACCCGGAGTACTACAACCTACAAAGATTGACGCTCAAGTTTGATGTGTACTCATTCGGCGTGGTGCTTCTTGAGGTGCGAGACCACCCCTCTTTCGAACTCAAGAAAAGAAGAAGGTGA 708 0.4605 MDEINNDDSSSMPSHMCRYFTMRHIRAATNNFDDVFIIGVGGFGNMYKGYIDRGSTPVAIKRLKPGSQQGEDEFLNEIEMLSQLCHVHLVSLISYCNDGAETILVYDFMQHGSLSDWIHRSYNNNNNHLLTWKQRLDYLHTSGKHNIIHRDVKSTNIFLDEKWVAKVSDFGLSKVGPTGISKTHISTIVKGSLEYLDPEYYNLQRLTLKFDVYSFGVVLLEVRDHPSFELKKRRR* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2757 235 Pfam Protein kinase domain 37 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2757 235 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 8 222 - -
Lja1g2757 235 ProSiteProfiles Protein kinase domain profile. 32 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2757 235 SUPERFAMILY Protein kinase-like (PK-like) 6 222 IPR011009 -
Lja1g2757 235 Gene3D Phosphorylase Kinase; domain 1 2 108 - -
Lja1g2757 235 PIRSF ILK 4 233 - -
Lja1g2757 235 PANTHER OS07G0166700 PROTEIN 8 222 IPR045272 GO:0004714|GO:0006468
Lja1g2757 235 SMART serkin_6 32 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2757 235 Gene3D Transferase(Phosphotransferase) domain 1 109 232 - -
Lja1g2757 235 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2757 Lja-Chr1 32924258 32924965 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2757 9 222 Receptor kinase-like Gene Family AT3G51550 58.929 9.65e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Lja1g2757 Pkinase 2.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2757 - - lja:Lj1g3v3027230.1 488.034