Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2747 ATGGTTCTCAAGTTTTTGGGTTTTGGCCGTTCCAAGAAGCACTCAAGTTCATATAAGAAGCCCTGCCCATCTGTAATAGAAGAGCTGTGCACTCGATTTTCTCTCGCCGATCTTAGGAAAGCAACCAATAACTTTGATCAAAAAAATCTAATTGGACAAGGAGGATTTGGTAAAGTATATAAAGGTTATCTCGAAATTGATCATGTTGCTACTGCAGTAGCTGTGAAGCGAAGGGGTATGTTATTAAGGCAGCAAGGTGAGGAACCGTTCAAGATGGAAACTAAGTTGCTCTGCCAACTCCGTCACCCCAATTTGATCACTCTGATCGGATTCTGCTTCGACGATGATGAGAAGATTATCGTGTACGAGTACATGTCCAATGGTTCCCTCACTGATCGAGTACTGAGTAAGGATGCAAGGGAACCACTGTCGTGGAAGACGAGGCTAGAGATCTGCATAGGAGCAGCACGTGCGGTGCACTACATTCACTCGGGACTCAAACGCACCATCATTCACCGTGGCGTCAACCCCTCTAACATTCTTTTGGATGACAACATGGTACCTAAACTCTCTGATTTCGGGATTTCCATACAAGGACAGTTGTTCACAGAAAAACCAAAACCAATTGAAGGAAAACCCCCTGCTGGTACATTTGGTTACATGCCTCCCGAGAGTCTAAGCAATCAAATCTTGACAGATAAATTCGATGTGTATTCATTTGGTGTTGTTCTAGTAGCTGTGGTATGTGCAAAGCCAATTTATACAATTATTAGGGAGATGAATGATTTTGAAGGAATTGAAATGTGTAATAATGGTTCAGAATCTTCAGATCGTATCACTATGCATTTTTACATTATGTCTAGGCTTCGAACAGAGCATATTGATCCGGCTCTGGTAGGAAATATTGCACCAGAGTGTTATGCAGTGTACATAGATATCATTGACAGGTGTTTGAAGCACGAGCCAGATGAACGACCAACAATGGGTGAAGTGGAGATACAACTTGAACATGCTCTGACTTTGCAACAAGAAGCAGACGCCAGAGATACTAGTGATGATTATCTCTCATTATTCATCACCATTACCCAACCGCAACAACAAGAGGCTTCAATTTCAGCTTAG 1122 0.4234 MVLKFLGFGRSKKHSSSYKKPCPSVIEELCTRFSLADLRKATNNFDQKNLIGQGGFGKVYKGYLEIDHVATAVAVKRRGMLLRQQGEEPFKMETKLLCQLRHPNLITLIGFCFDDDEKIIVYEYMSNGSLTDRVLSKDAREPLSWKTRLEICIGAARAVHYIHSGLKRTIIHRGVNPSNILLDDNMVPKLSDFGISIQGQLFTEKPKPIEGKPPAGTFGYMPPESLSNQILTDKFDVYSFGVVLVAVVCAKPIYTIIREMNDFEGIEMCNNGSESSDRITMHFYIMSRLRTEHIDPALVGNIAPECYAVYIDIIDRCLKHEPDERPTMGEVEIQLEHALTLQQEADARDTSDDYLSLFITITQPQQQEASISA* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2747 373 PANTHER TYROSINE KINASE FAMILY PROTEIN 18 355 - -
Lja1g2747 373 Gene3D Transferase(Phosphotransferase) domain 1 125 360 - -
Lja1g2747 373 ProSiteProfiles Protein kinase domain profile. 45 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2747 373 PANTHER OS07G0166700 PROTEIN 18 355 IPR045272 GO:0004714|GO:0006468
Lja1g2747 373 ProSitePatterns Protein kinases ATP-binding region signature. 51 76 IPR017441 GO:0005524
Lja1g2747 373 Pfam Protein tyrosine and serine/threonine kinase 48 332 IPR001245 GO:0004672|GO:0006468
Lja1g2747 373 SUPERFAMILY Protein kinase-like (PK-like) 35 340 IPR011009 -
Lja1g2747 373 Gene3D Phosphorylase Kinase; domain 1 7 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2747 Lja-Chr1 32815406 32817167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2747 16 357 Receptor kinase-like Gene Family AT5G38990 42.197 4.32e-76 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Lja1g2747 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2747 - - lja:Lj1g3v3029330.1 735.332