Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2745 ATGCAAGAAGCAGATCGTTGGCGAAACCCTAAGGTTTTAGGGTCCGAGGTCTTTGAGTTTGAGAATCAGAACATTACAACAAAAAGGTATTTACAGGAAAGGCGAATGGATTATTCAAGTCAATCCGTTTGCTGTGATGGAACAGGCGGAGAAAAGGTTCTGGAGGAGTTGTCCCTTTTTGAACAAGATGATGGTGAAATCGAAACTGATTATGTAGATGTTGCTGAAGATGTTCTGAAATATTTTACTGAAGACATTAGTAGCTCTGCCCATTCTAGTGTTGCGTGTGGTGTTCGATTCAGTGAAGATATGGGAAATGGTGAAGAGAATTCCATGGCTACAACAGAGGTAAACAGTGTATCTGATATTTGTGCAATTGACATGAAGACTTTTATCCCAATTCAAGTAGCAAGATATGATTTTGTTAGCTTGGAGGTTGCATTCATGTTTTACGCGCATTTTGCACGTGCCAATGGATTCTGTGTTAGAAAATACAACATTATTAGAAGCAGGAAGACAAGTGAGATTTTGCAACAGGAATTTGTTTGTAACAAGAATGGTAAGAGAGAAAACCGGGGCGTATCGGTTGAACAAAGAAAAAGGACACCTAGGAGGGAAACCAGATGTGGGTGTAAAGCTATGTTTCGGGTACATGTTGATGTAACCACATCTCGTTGGTACTGCACTTTGTTTACAAATGATCACAACCATGAGTTATTTGATGATGTGGATTGTGGCTTGCAAGCTCCACATAGAAAGCTTAGTTTGAGCGACATTGTTCAGCTCAATGGCATGAAGGATGTTGGCATGGGTGTTCCTCACATGTGGCGTGCTTTTGCAACTCAATGTGGAGGCTTTGAGAATATCCCGTTCACAAAAAGGTCTGTATACAATCAGATTGGCAAGCAACGACAAATGCAAAAAAGCGATGCTTCCTCCGCAATGCAGTTCATTGGTAAGTTGAGTTCCATAGACAATGATATGTATTGGGAGCGCACTATTGATAATGAGCGTAGACTTCAACATTTGTTTTGGTCCGATGGCATTAGTCGGTTGAGTTACAAGGTTTATGGTGATGTGCTAGCTTTTGATGCAACCTATTCGAAAAATAAGTATTTGTTGCTCGTAGTTGTCTTCTCGGGGGTAAACAACCATAACCGAACAACCATTTTCGCTACTGCTATTGTTGCTAATGAAACAGAAGAAACATATGTTTGGCTACTTGAGGAATTCCTGAAAGCAATGGATGGTAAACATCCAAAAACTGTTATAACAGATGGGGCTGTAGTGATGAAGAATGCAATCCACCGGGTGTTTCCTAATGTACAGCATCGTTTGTGTGCTTGGCACCTTCTTTGTAACGCGAATACTAGAATTGGAAACCCGCAGTTTACTCAAGCTTTCAAGAGGTGCATGTTTGGTGACTATGATGTTGGCAAATTTGAAAAAAAGTGGGATGATATGGTTGCAAAGTTTGGATTGCAAAACAACAAATGGGTTCAAGCACAGTACGCTACAAGGAAAAAGTGGGAAGCAGCACATTTGAGGGGGAAATTCTTTGCTGGATTCCGGACAACGTCTAGATGTGAGGGTCTGCATTCTGAGCTTACGAAGTTTGTTCACTCGCGTCAGAACTTGACTGATTTCTTAGTGCAGTACCACCACTGTTTGAAGAACATGCGTTATAGAGAGGTGGACGATGATTTTCATTCCATAAATGGGAATCCTGTTCCACAAACAAAGATGGAGGCCTTAGAGATTTCTGGTGGGAAACATTTTACAAATGCCATTTACTTGCTATATGTCAGTGTCATTAAAGAGGCTGCTTTGCTGAAGGTATTACAATGCCACGAGGCATTAACATGCACCATTTATACTGTAGCGAAGCTAATATCAGGGGCGAAGGAATGGCATGTTTCTGTTTATGGAGAACCAGTTGACTATAAATGCTCATGTATGAAAATGGAGTCACGAGGATTACCTTGCGAGCATATAGTTGCTGTGTTACACCATTTGAAGATTGATGAGTTGCCTCAGTGCTTAATACTGAAAAGATGGACCAAAGGTGCAAAGGATGGGGTCTATAGTGCGAAGGGTGCTGGAGGGGTATGTTGGGATTCGCAGAAAAGTGCTAGATGTGGAGCCTTGATGGAATTATACAGAGTTCTTAGTGAACTAAATTCAGACACACTGGAAGATTTCAACAATGCAAGGAAGAATGCTAATCAGCAAATAGAGTTGGGAAGAGCAAAGAGATCTTGCCAAAGAGGAGATTTATCAGTCAATAAAAATGATTTTTCAAATCTGAGGGACCCTGTGCGTATACGGGCAAATGTGCGTGTTGGAAAGGGTTCATCGGCTTCGGGCGTGAGAGCCAAACGTGTCTTAAATTGTTCACTTTGTAAGCAACCTGGGCATAACAAACTTACGTGCACATATCTGGCAAGCCAAGGTCAATCTGTTGGACATGTGGAAACAGACTATGACCTCTTTAGTGTAGAAGATCTCAACGTTGACAATATGGACGAAGTTTAG 2535 0.4134 MQEADRWRNPKVLGSEVFEFENQNITTKRYLQERRMDYSSQSVCCDGTGGEKVLEELSLFEQDDGEIETDYVDVAEDVLKYFTEDISSSAHSSVACGVRFSEDMGNGEENSMATTEVNSVSDICAIDMKTFIPIQVARYDFVSLEVAFMFYAHFARANGFCVRKYNIIRSRKTSEILQQEFVCNKNGKRENRGVSVEQRKRTPRRETRCGCKAMFRVHVDVTTSRWYCTLFTNDHNHELFDDVDCGLQAPHRKLSLSDIVQLNGMKDVGMGVPHMWRAFATQCGGFENIPFTKRSVYNQIGKQRQMQKSDASSAMQFIGKLSSIDNDMYWERTIDNERRLQHLFWSDGISRLSYKVYGDVLAFDATYSKNKYLLLVVVFSGVNNHNRTTIFATAIVANETEETYVWLLEEFLKAMDGKHPKTVITDGAVVMKNAIHRVFPNVQHRLCAWHLLCNANTRIGNPQFTQAFKRCMFGDYDVGKFEKKWDDMVAKFGLQNNKWVQAQYATRKKWEAAHLRGKFFAGFRTTSRCEGLHSELTKFVHSRQNLTDFLVQYHHCLKNMRYREVDDDFHSINGNPVPQTKMEALEISGGKHFTNAIYLLYVSVIKEAALLKVLQCHEALTCTIYTVAKLISGAKEWHVSVYGEPVDYKCSCMKMESRGLPCEHIVAVLHHLKIDELPQCLILKRWTKGAKDGVYSAKGAGGVCWDSQKSARCGALMELYRVLSELNSDTLEDFNNARKNANQQIELGRAKRSCQRGDLSVNKNDFSNLRDPVRIRANVRVGKGSSASGVRAKRVLNCSLCKQPGHNKLTCTYLASQGQSVGHVETDYDLFSVEDLNVDNMDEV* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2745 844 Pfam SWIM zinc finger 638 673 IPR007527 GO:0008270
Lja1g2745 844 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 137 737 - -
Lja1g2745 844 SMART 26again6 648 675 IPR006564 GO:0008270
Lja1g2745 844 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 137 737 IPR031052 GO:0006355
Lja1g2745 844 ProSiteProfiles Zinc finger SWIM-type profile. 637 673 IPR007527 GO:0008270
Lja1g2745 844 Coils Coil 731 751 - -
Lja1g2745 844 Pfam MULE transposase domain 360 452 IPR018289 -
Lja1g2745 844 Pfam FAR1 DNA-binding domain 150 240 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2745 Lja-Chr1 32805862 32808875 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g2745 MULE 1.8e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2745 - - ccaj:109791994 635.95