Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2742 ATGATTAGAAGAATGGCTCTCCAGTGTTTCTGTTTTGGTTGTTCGAAGAAGCACTCAAGTTCATCTAAGAGGCCTTACCAAACAACAGTACTAGAAGAGTTATTCCATCATTTTTCTCTCGCTGATTTAAGGAAAGCAACCAATAACTTCCATGAAAATAATTTAATTGGAAGAGGAGGCTTTGGCAAGGTTTATAAAGGTTGTCTTCAACTTGATCATGTTGCTACAGCAGTAGTAGCAGTGAAGGTAAAGAGTATACATATATATTATAAGCCGAAGGAGTTCAAGAACGAAATTGAGTTGCTCTGCCAACTCCGTCATCCTAATTTGATATCTCTGATCGGATTCTGCGTCCATAAAGACAAGGAGATTATCGTGTACGAGTACATGTCCAATGGTTCCCTCGCTGATCGCCTATTCGAAAGCGATGCAAGGGAACCACTGTCATGGAAGAAGAGGCTTGAGATCTGCATAGGAGTAGCGCGTGGGTTGCACTACCTTCACTCGGGACTCAAACGCACCATCATTCACCGTGACATCAAACCCGCTAACATTCTTTTGGATGACAACATGGTACCTAAACTCTCTGATCTCGGGATTTCCGTACAAGGAGCATTGTTCACAGAAAAGCCAAAACCAATTCAAGTAAAAGAAGTTTTTCATTCAACACAAAGCGGTACATACAATTACATGGCCCCCGAATATATACGCAAAGGCACCATGACGGATCAATACGATGTTTATTCATTTGGTATTGTTCTAATAGATGTGGTATCTCGAAAGCCAGTTGATGCAATTAGGAATGAGATGTTTGGTTTCCAGCAACCAACAAATGAAAAAAGAGAAATGTCTAATAATGGTTCAAAATCTTCTTCAGATGATCATATTACTATGATTGAGGTGCCTGCGCCTGAGCCACCAAATGAAGAAGTAGAAATGTCTAATAATGGTTCAGAATCTTCTTCAGATGATCATATTACAATGATTGAGATGCCTGTGCCTGAGCCACCAAATGAAGAAGTAGAAATGTCCAATAATGATTCAGAATTTTCAGATGATCATATTACTATGTCTTGGGGTTCTAAGATTAATATGTTAAGGCTTCGAGCAGAGTATATTGATCCGGCTCTGGTAGGAAATATTGCACCACAATGTTATGCAGCATACATCGATATCATTGACAGGTGCTTGAAGGATGAACCAAATGAACGACCAAACATGGGCGAAGTGGAATTGCTACTTGAGCATGCGCTGACTTTGCAACTGGAGGCAGATGCCACAGATACTAGTGATCATTGA 1299 0.4026 MIRRMALQCFCFGCSKKHSSSSKRPYQTTVLEELFHHFSLADLRKATNNFHENNLIGRGGFGKVYKGCLQLDHVATAVVAVKVKSIHIYYKPKEFKNEIELLCQLRHPNLISLIGFCVHKDKEIIVYEYMSNGSLADRLFESDAREPLSWKKRLEICIGVARGLHYLHSGLKRTIIHRDIKPANILLDDNMVPKLSDLGISVQGALFTEKPKPIQVKEVFHSTQSGTYNYMAPEYIRKGTMTDQYDVYSFGIVLIDVVSRKPVDAIRNEMFGFQQPTNEKREMSNNGSKSSSDDHITMIEVPAPEPPNEEVEMSNNGSESSSDDHITMIEMPVPEPPNEEVEMSNNDSEFSDDHITMSWGSKINMLRLRAEYIDPALVGNIAPQCYAAYIDIIDRCLKDEPNERPNMGEVELLLEHALTLQLEADATDTSDH* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2742 432 Gene3D Transferase(Phosphotransferase) domain 1 325 427 - -
Lja1g2742 432 Gene3D Phosphorylase Kinase; domain 1 11 129 - -
Lja1g2742 432 ProSitePatterns Protein kinases ATP-binding region signature. 56 82 IPR017441 GO:0005524
Lja1g2742 432 MobiDBLite consensus disorder prediction 303 323 - -
Lja1g2742 432 PANTHER TYROSINE KINASE FAMILY PROTEIN 20 273 - -
Lja1g2742 432 ProSiteProfiles Protein kinase domain profile. 50 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2742 432 PANTHER TYROSINE KINASE FAMILY PROTEIN 361 430 - -
Lja1g2742 432 SMART serkin_6 50 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2742 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Lja1g2742 432 PANTHER OS07G0166700 PROTEIN 361 430 IPR045272 GO:0004714|GO:0006468
Lja1g2742 432 PANTHER OS07G0166700 PROTEIN 20 273 IPR045272 GO:0004714|GO:0006468
Lja1g2742 432 Pfam Protein kinase domain 50 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2742 432 Gene3D Transferase(Phosphotransferase) domain 1 130 323 - -
Lja1g2742 432 MobiDBLite consensus disorder prediction 275 294 - -
Lja1g2742 432 SUPERFAMILY Protein kinase-like (PK-like) 23 414 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2742 Lja-Chr1 32790783 32792797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2742 33 263 Receptor kinase-like Gene Family AT5G39000 49.145 9.12e-64 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja1g2742 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2742 - - lja:Lj0g3v0196439.1 830.476