Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2740 ATGAGAAAAAATGGTCAAAGTAAAACAAAACTCCTGCAATTGAAAATCAACGACGTTGTGTGTCTTCCCACAACACCGCGTACGCGCAGCCTTTGCCACCAAAAATCCAACAACAACAACATTAACAACAACGAACAACAACAACGTTTGTTATTTCTTATTACAACAACACCTCCCTTCAAGAATGATGTGGTGTTGTTGATTTTTCTTCTGAGCTTTTCATCATTTTGGATTTGGATCCCTCAAATGGCACAATCATTCGGTCAAACTGAGATTAATTGGGACAAGCTAGATAAAACTAAGTTCTATGTCGTGGGAGCTGGACTTTTTACGGGTGTTACGGTGGCACTTTACCCGGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCTAAAAAGGGTGCTGTGGAGAGGAACGCGTTCTCTGTCGCAAAAGGGTTGCTTAAGACAGATGGCATCCCTGGTTTGTATAGAGGGTTTGGCACAGTTATCACCGGTGCGATTCCGGCTAGAGTCATATTCCTCACCACTCTGGAGACCACAAAGGCGGCTGCCTTTAGAATGCTCGAACCTTTTAGGCTATCTGAAGCTACGCAGGTTGCTGTAGCAAATGGTTTTGCAGGCATGACATCGTCGCTTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGGAATGCCCAATATAGTGGGGGTCTGGATGTTGCTCGTAACATTTTAAGGGCTGATGGAATCCGGGGATTTTATCGAGGGTTTGGTCTCTCCGTTGTTACTTATTCACCTTCAAGTGCAGTATGGTGGGCAAGTTATGGTTCAAGCCAACGCTTCATTTGGAGATTCTTGGACCAAGGTGCCACAGGTGAAGACACTCCTAGTCTGCAGAAGATTATGTTAGTTCAGGCTACTGGAGGGGTTATTGCCGGCGCAACTTCATCCTGCATTACGACCCCTCTGGATACTATCAAGACACGTTTACAGGTGATGGGACATGAAAAAAGAAGCTCTATAAAACAAGTTGCTAAAGATTTAATCAATGAAGATGGTTTGAAAGGCTTCTATAGAGGTTTTGGTCCAAGATTTTTCAGTATGTCCGCGTGGGGCACTTCAATGATTTTGACTTATGAGTATCTGAAACGCGTATGCTTAAAAGATGAATAG 1188 0.436 MRKNGQSKTKLLQLKINDVVCLPTTPRTRSLCHQKSNNNNINNNEQQQRLLFLITTTPPFKNDVVLLIFLLSFSSFWIWIPQMAQSFGQTEINWDKLDKTKFYVVGAGLFTGVTVALYPVSVVKTRLQVAKKGAVERNAFSVAKGLLKTDGIPGLYRGFGTVITGAIPARVIFLTTLETTKAAAFRMLEPFRLSEATQVAVANGFAGMTSSLFAQSVFVPIDVVSQKLMVQGYSGNAQYSGGLDVARNILRADGIRGFYRGFGLSVVTYSPSSAVWWASYGSSQRFIWRFLDQGATGEDTPSLQKIMLVQATGGVIAGATSSCITTPLDTIKTRLQVMGHEKRSSIKQVAKDLINEDGLKGFYRGFGPRFFSMSAWGTSMILTYEYLKRVCLKDE* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2740 395 ProSiteProfiles Solute carrier (Solcar) repeat profile. 305 390 IPR018108 -
Lja1g2740 395 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 90 395 - -
Lja1g2740 395 PRINTS Mitochondrial carrier protein signature 115 129 IPR002067 GO:0055085
Lja1g2740 395 PRINTS Mitochondrial carrier protein signature 314 336 IPR002067 GO:0055085
Lja1g2740 395 PRINTS Mitochondrial carrier protein signature 259 277 IPR002067 GO:0055085
Lja1g2740 395 ProSiteProfiles Solute carrier (Solcar) repeat profile. 99 183 IPR018108 -
Lja1g2740 395 Pfam Mitochondrial carrier protein 107 183 IPR018108 -
Lja1g2740 395 Pfam Mitochondrial carrier protein 309 394 IPR018108 -
Lja1g2740 395 Pfam Mitochondrial carrier protein 201 287 IPR018108 -
Lja1g2740 395 ProSiteProfiles Solute carrier (Solcar) repeat profile. 198 286 IPR018108 -
Lja1g2740 395 SUPERFAMILY Mitochondrial carrier 95 387 IPR023395 -
Lja1g2740 395 Gene3D Mitochondrial carrier domain 103 395 IPR023395 -
Lja1g2740 395 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 90 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2740 Lja-Chr1 32777241 32782500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2740 92 395 Chloroplast and Mitochondria Gene Families AT5G15640 73.616 2.48e-164 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2740 K15121 - gmx:100782750 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2740 1 32777241 32782500 Lja1g2740 1 32777241 32782500 ECH
Lja2g1523 2 14938424 14943421 Lja1g2740 1 32777241 32782500 PCT