Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2738 ATGAGGCTTGTCATAGCAGCTCTTTGCGTAATTGTGCTATTTTCTTATGGAGTTGCCTATGATCCTTTGGATCCTAACGGAAACATAACAATCAAATGGGATGTTGTGTCTTGGACACCAGATGGCTATGTGGCAGTGGTAACAATGAGTAATTTCCAAAAGTTCAGACACGTCATGAACCCTGGATGGACATTGGGATGGTCATGGGCTAAGAAAGATGTTATATGGTCCATGGTAGGGGCTCAAACCACAGAGCAAGGAGACTGCTCAAAGTTCAAAGGCAATGTACCTCACTGCTGCAAGAAAACTCCCACAGTTGTAGACTTGCTCCCTGGTGTTCCTTACAATCAGCAATTCTCAAACTGCTGCAAGGGTGGAGTGGTTGCAGCATGGGGCCAAGACCCTTCAGCAGCTGTCTCATCCTTCCAAATCAGTGTGGGGCAAGCTGGTACTTCAAACAAGACAGTTAAACTTCCCAAGAACTTCACACTCTCAGCTCCAGGACCAGGCTACACTTGTGGCCCTGCCAAGATTGTTCCTTCCACCACTTTCCTCACAGCCGACAAGCGCCGCAAGACTCAAGCACTTATGACATGGAACGTTACCTGCACATATTCTCAATTTCTGGCAAGAAAAAACCCAAGTTGCTGTGTATCTTTGTCATCCTTCTACAATGAGACCATTACCCCTTGTCCCTCTTGTGCCTGTGGCTGCCAGAACAAGAAGAACTGTGTCAAGAATGAATCTAAATTTCTCAGCAAGGCTGGGGTTCACACACCAAAGAAAGACAGTGACCCACTGCTGCAGTGCACTCATCATATGTGCCCTATCAGGGTACATTGGCATGTGAAGGTCAACTACAAAGACTATTGGCGAGTCAAGATCGCTGTAACAAATTTCAATTACAGGATGAATTACTCTCTCTGGACTCTTGCAGTTCAGCATCCAAATCTTAAACATGTAACTCAAGTTTTCAGCTTTGATTACAAGCCTTTGCTTCCTTATGAGTCCATAAATGATACTGGTATGTTCTTTGGCATGAAATACTTTAATGATCTCTTAATGGAAGCTGGACCAAGTGGGAATGTTCAATCAGAAGTGCTTCTTCAGAAGGACATGGATACGTTCACACTCAAGCAGGGGTGGGCATTTCCTCGCAAGATCTACTTTAATGGCGAAGAATGCATGATGCCGTCACCTGACACCTACCCATTCCTCCCTAATTCTGCCTCTGTAAATGTTCTAAACTTCCCAGGATTCATTTTCTCATTGATTGTGCTGCTAGCTGCTTGGTGA 1296 0.4491 MRLVIAALCVIVLFSYGVAYDPLDPNGNITIKWDVVSWTPDGYVAVVTMSNFQKFRHVMNPGWTLGWSWAKKDVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSAAVSSFQISVGQAGTSNKTVKLPKNFTLSAPGPGYTCGPAKIVPSTTFLTADKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCQNKKNCVKNESKFLSKAGVHTPKKDSDPLLQCTHHMCPIRVHWHVKVNYKDYWRVKIAVTNFNYRMNYSLWTLAVQHPNLKHVTQVFSFDYKPLLPYESINDTGMFFGMKYFNDLLMEAGPSGNVQSEVLLQKDMDTFTLKQGWAFPRKIYFNGEECMMPSPDTYPFLPNSASVNVLNFPGFIFSLIVLLAAW* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2738 431 PIRSF COBRA 1 431 IPR006918 GO:0010215|GO:0031225
Lja1g2738 431 PANTHER PROTEIN COBRA 4 429 IPR006918 GO:0010215|GO:0031225
Lja1g2738 431 PANTHER COBRA-LIKE PROTEIN 4 429 - -
Lja1g2738 431 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2738 Lja-Chr1 32743924 32747431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2738 19 430 COBRA Gene Family AT3G29810 66.748 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2738 - - gmx:100783410 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2738 1 32743924 32747431 Lja1g2738 1 32743924 32747431 ECH
Lja1g2738 1 32743924 32747431 Lja2g1521 2 14923695 14927930 ECH
Lja2g1520 2 14913251 14916536 Lja1g2738 1 32743924 32747431 PCT
Lja1g2738 1 32743924 32747431 Lja2g1521 2 14923695 14927930 PCT