Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2731 ATGGTTCCTCATCAGAGCTATTCGGCTAGAGAGAGAGAGAATATAGATAAATCTGACATAAATGGAACCCACCAAACCCGAAGGTTATGGATAAGTCGAAGGCATCACCGACAACGACGAGTCAGTGCTAATACAAAAGGAAAGGCCATAAAAGAAGCATGTTCTTCAACGGGATCTATCATAGGAGTGAAAGACATTAAAGTAGCAGCAGAGAAATTAGGATGGAGGAAAGGCCCTTGGACTCATGAAGAGGACAAGTTGCTCAGTGAGTATGTCAGCTTGCATGGGGAGGGTAGTTGGAGTTCAGTGTCTAAGTTTACAGGCTTAAATAGGGGTGGAAAAAGTTGCAGGTTGAGATGGGTAAATTATTTGAGGCCGGGCCTCAAGAAAGGTCATTTAACATCTCTAGAAGAAGGAATGATTATTGAATTGCACGCCATTATGGGTAACAAGTGGTCTACAATAGCGAGGTACTTGCCGGGTAGAACTGATAACGAGATTAAGAACTACTGGAGAACCCACTTTGGGAAGAGAACAGAGAAACCAAAAACCAAGAAGCTAGAAAAGGGAAAAGCAAAGGAAGTGAACCGGTTGAAGGAAAAACAGGAACAGCAACCTGATCTGGATCCGAACCACATGATCAAAAGCATCTCGTCTCATGATGTGGAGACGAAAAATGGAACAAAACCAACCGAGACAAGAGACAAATTAGAGGAATATGAGATGGGTTTCATGTACCCAACAATGGAACAACAAAACACTAGTATCCCTTTGATTCATCTAGAACTTTCGTGCATGTGGCCCGAAACTACTGCAACAGATGATGATGGTCTATGGTGTAGTTTATGGAATTTTGATGAACCACAAGGGTTTGCTGATCATGTAAACCAGTTTGGCAAATGTGTCATGCCAAATCAAGCTACCTTTGGAGCTTGTTGGGAATCTTCCTTACTTGGGGTTTCCCAAGGTAGTTCCACATCTAGTGAATAA 990 0.4242 MVPHQSYSARERENIDKSDINGTHQTRRLWISRRHHRQRRVSANTKGKAIKEACSSTGSIIGVKDIKVAAEKLGWRKGPWTHEEDKLLSEYVSLHGEGSWSSVSKFTGLNRGGKSCRLRWVNYLRPGLKKGHLTSLEEGMIIELHAIMGNKWSTIARYLPGRTDNEIKNYWRTHFGKRTEKPKTKKLEKGKAKEVNRLKEKQEQQPDLDPNHMIKSISSHDVETKNGTKPTETRDKLEEYEMGFMYPTMEQQNTSIPLIHLELSCMWPETTATDDDGLWCSLWNFDEPQGFADHVNQFGKCVMPNQATFGACWESSLLGVSQGSSTSSE* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2731 329 CDD SANT 137 175 IPR001005 -
Lja1g2731 329 SMART sant 76 126 IPR001005 -
Lja1g2731 329 SMART sant 129 177 IPR001005 -
Lja1g2731 329 Pfam Myb-like DNA-binding domain 136 174 IPR001005 -
Lja1g2731 329 Pfam Myb-like DNA-binding domain 77 124 IPR001005 -
Lja1g2731 329 CDD SANT 79 124 IPR001005 -
Lja1g2731 329 PANTHER MYB TRANSCRIPTION FACTOR 70 293 - -
Lja1g2731 329 Gene3D - 77 129 - -
Lja1g2731 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 128 IPR017930 -
Lja1g2731 329 ProSiteProfiles Myb-like domain profile. 125 175 IPR001005 -
Lja1g2731 329 ProSiteProfiles Myb-like domain profile. 76 124 IPR001005 -
Lja1g2731 329 MobiDBLite consensus disorder prediction 178 219 - -
Lja1g2731 329 Gene3D - 133 207 - -
Lja1g2731 329 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 70 293 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lja1g2731 329 SUPERFAMILY Homeodomain-like 74 171 IPR009057 -
Lja1g2731 329 MobiDBLite consensus disorder prediction 178 234 - -
Lja1g2731 329 Coils Coil 185 205 - -
Lja1g2731 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 179 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2731 Lja-Chr1 32578806 32585719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2731 74 292 MYB Transcription Factor Family AT3G30210 46.610 6.87e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g2731 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2731 K09422 - gmx:100785540 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2731 1 32578806 32585719 Lja1g2731 1 32578806 32585719 ECH