Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2730 ATGGGGAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTTACATTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCCACTCGTGGCAAGCTTTATGAGTTTTGTAGCAGCTCTAGCATGGTCAAGACACTTGAAAGGTACCAGAAGTGCAGTTATGGTGCTGTGGAAGTTAACAAACCAGCCAAAGAACTTGAGAGCAGCTACCGTGAATACTTAAAGCTGAAAGGAAGATTTGAATCTCTGCAAAGAACCCAGAGAAACCTTCTAGGGGAGGACTTGGGCCCGCTTAATAGCAAAGATCTTGAGCAGCTTGAACGGCAATTGGACTCATCTCTGAAGCAAGTGAGGTCCACAAAGACACAATTCATGCTGGACCAGTTGTCTGATCTTCAAAATAAGGAGCAGATGTTGGTAGAAGCAAACAGATCCTTGTCAGTGAAGCTGGATGATATCAATTCAAGAAATCACTACAGGCAATCATGGGATCAAGCTGGTGATCAAAGCATGCAGTATGGTGGTTCACAAAATGCTCACTCTCAGGGCTTCTTCCAGCCATTGGAATGCAACCCCACATTGCAGATTGGTTCTGACTATAGGTACAATGGTGTGGCTTCAGATCAGATGGCTGCAACAACTCAAGCTCAACAAGTGAATGGGTTTATTCCTGGATGGATGCTTTGA 750 0.444 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCSSSSMVKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKGRFESLQRTQRNLLGEDLGPLNSKDLEQLERQLDSSLKQVRSTKTQFMLDQLSDLQNKEQMLVEANRSLSVKLDDINSRNHYRQSWDQAGDQSMQYGGSQNAHSQGFFQPLECNPTLQIGSDYRYNGVASDQMAATTQAQQVNGFIPGWML* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2730 249 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lja1g2730 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja1g2730 249 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Lja1g2730 249 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja1g2730 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lja1g2730 249 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja1g2730 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja1g2730 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja1g2730 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja1g2730 249 Coils Coil 124 144 - -
Lja1g2730 249 PANTHER MADS BOX PROTEIN 1 235 - -
Lja1g2730 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja1g2730 249 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 235 - -
Lja1g2730 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja1g2730 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2730 Lja-Chr1 32558823 32567401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2730 1 249 MADS-box Gene Family AT5G15800 74.144 5.86e-127 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja1g2730 K-box 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2730 K09264 - gmx:100785322 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2730 1 32558823 32567401 Lja4g2065 4 22181658 22188382 ECH
Lja1g2730 1 32558823 32567401 Lja1g2730 1 32558823 32567401 ECH
Lja1g2730 1 32558823 32567401 Lja2g1509 2 14647424 14651485 ECH
Lja2g1278 2 12199062 12206083 Lja1g2730 1 32558823 32567401 ECH
Lja2g1509 2 14647424 14651485 Lja1g2730 1 32558823 32567401 PCT