Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2725 ATGGGTTCTTTTTGTTCTTGTCTGGGTGTGAATGACTTGGAAGATTATGTGAATCCAAATAATCATGTATATAATAGGAACTGCAGGTGTCTCCGTTGCTTCCTGCAGAATTTCAGGAATGTTGGTAGATCAATATTCCATAGAGGGGAAGTGCATTCAGTTCCTGGATCTATACAGGGGGCAGCGGCTATGACTTCTACAGCATCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCACGGCCCTTGCCTTATGATGTCGACCCCAGGTATTTCCGCTCACAGCAGGATGGGCTAGTTTCGAGACGTGACAAGGGTTCAAGTCATTTGAATGAGGAGTCAGAACCTCTAAGAGGTGATGTGGATGTGGAGCCAGAATCGTTAAGTTCGGGTGATAAGCGGTATGGATGTACGGGTGATGATGGATCAAAGGAGTACCGTTCTAAGTCCTCAGTCAGACTTTCATCTGCAAAACTTGTAACTGGAGCTGCACTTGTCTATGGATCCTCATCGGAAGACGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCAAGGATAATGACAAAATGCTCTCATCATTATCATCTCGGTTGCATATATGAATGGATGGAGAGGAGTGACAGCTGTCCAGTTTGTGGGAAGGTGATGGACTTCGATGAGACGACTTAA 690 0.4478 MGSFCSCLGVNDLEDYVNPNNHVYNRNCRCLRCFLQNFRNVGRSIFHRGEVHSVPGSIQGAAAMTSTASLDNSLSDMYRSPPRPLPYDVDPRYFRSQQDGLVSRRDKGSSHLNEESEPLRGDVDVEPESLSSGDKRYGCTGDDGSKEYRSKSSVRLSSAKLVTGAALVYGSSSEDEDVCPTCLEEYTEENPRIMTKCSHHYHLGCIYEWMERSDSCPVCGKVMDFDETT* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2725 229 MobiDBLite consensus disorder prediction 99 150 - -
Lja1g2725 229 SMART ring_2 179 219 IPR001841 -
Lja1g2725 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 227 IPR013083 -
Lja1g2725 229 MobiDBLite consensus disorder prediction 73 92 - -
Lja1g2725 229 ProSiteProfiles Zinc finger RING-type profile. 179 219 IPR001841 -
Lja1g2725 229 Pfam RING-H2 zinc finger domain 176 219 IPR024766 GO:0008270
Lja1g2725 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 228 - -
Lja1g2725 229 SUPERFAMILY RING/U-box 174 225 - -
Lja1g2725 229 MobiDBLite consensus disorder prediction 99 131 - -
Lja1g2725 229 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2725 Lja-Chr1 32433525 32437446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2725 1 228 C3H Transcription Factor Family AT5G15790 54.077 2.73e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2725 - - gmx:100788192 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2725 1 32433525 32437446 Lja1g2725 1 32433525 32437446 ECH