Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2720 ATGGCCGAGCAGCATGGCATTCCAATGTATCTCTCCCCCAGATTCGGTGAAAACTCATTAGAGCAGCACACTCCCAACATTGGACCCTTCGGTTTCCACCTCCAACCACCACAGTTTGGCCTTGGACCCAACCATCAGGTAAGGTCCTCCTCCTCCAAGAGGACCGTCGGCAGGCCACCCGGTTCTAAGAATAAGCCGAAGCCCCCGATGGTCATCATCAAGAACAACAATGACATAAAGTTAGCAATTATTGAGGTCGGTGCCGGCACCGACGTCATGGAGACGGTGGTCCAGCTGGCCCGCCGCTACAACTCCAACATCATGGTGGTCCATGCTGCGGGTACAATTTCCAATGTGACTCTCAGCAACCCTCTGGACCAAGCTTTCATTGCCCATGGACCCTTTGTTCTGTTGGGTCTCTCTGGATCCTATGTGACACCACATTCTCTCAACGATCCCTTGCCTTCTTCTTCTTTTCCATCTTTCACCCCCAACCTCTCTCCCTCTGCGACTCGCTCCACCTTCGCGATCTCCATCTCTAGCTTACAGGGAAAAGTCATTCATGGGGTCGTTGCTGGAAAGATCATGGCCGCAAATAATGGGGTCACTGTTACGACTCTGCTTTTCAAGAACCCTGAGTATCACAAATTTGGTGTCGTCACTGAAGGCGATATTGTGGAAGAACATATTGATAACCCTCATGACAATGGTGGTGGCAGTGATCACGGGGCCGCTAGCGGTTTTATAGGTGGTGGGTGTGCTGGTGGTTTTGACATGCTTGAATTTAAACAAGATTGA 798 0.5088 MAEQHGIPMYLSPRFGENSLEQHTPNIGPFGFHLQPPQFGLGPNHQVRSSSSKRTVGRPPGSKNKPKPPMVIIKNNNDIKLAIIEVGAGTDVMETVVQLARRYNSNIMVVHAAGTISNVTLSNPLDQAFIAHGPFVLLGLSGSYVTPHSLNDPLPSSSFPSFTPNLSPSATRSTFAISISSLQGKVIHGVVAGKIMAANNGVTVTTLLFKNPEYHKFGVVTEGDIVEEHIDNPHDNGGGSDHGAASGFIGGGCAGGFDMLEFKQD* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2720 265 MobiDBLite consensus disorder prediction 42 58 - -
Lja1g2720 265 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 201 IPR005175 -
Lja1g2720 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 48 240 IPR014476 GO:0003680
Lja1g2720 265 MobiDBLite consensus disorder prediction 16 71 - -
Lja1g2720 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 48 240 - -
Lja1g2720 265 SUPERFAMILY AF0104/ALDC/Ptd012-like 77 199 - -
Lja1g2720 265 Gene3D - 80 218 - -
Lja1g2720 265 ProSiteProfiles PPC domain profile profile. 76 231 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2720 Lja-Chr1 32356217 32357014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2720 53 253 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.333 1.09e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2720 - - lja:Lj2g3v1280070.1 271.166