Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2717 ATGGCCGCAGCAGCAGCTCGTCCCCTTGTCACCGTGCAGGCCCTGGAGGGCGATATGGTTGCAGACGCCGCTGCAACCATTCCCATCCCCGATGTCATGAGGGCCTCCATCCGCCCTGACATCGTCAACTTCGTCCACTCCAACATTTCCAAAAACTCCCGTCAACCTTACGCCGTCTCCCGCCGCGCCGGACACCAGACCTCCGCCGAGTCCTGGGGAACTGGCCGTGCCGTCTCCCGTATCCCCCGTGTTCCCGGTGGCGGTACCCACCGTGCTGGCCAGGGAGCTTTCGGAAACATGTGCCGTGGTGGTCGCATGTTCGCTCCCACTAGGATCTGGCGCCGCTGGCACCGTAAGATCAACGTCAACCAGAAGCGCCATGCTCTCGTCTCCGCCATCGCCGCCTCCGCCGTTCCTTCCCTCGTCCTCGCCCGCGGCCACCGCATCGAGACCGTACCTGAGTTTCCCCTTGTCGTCAGTGACTCCGCTGAGGGTGTGGAGAAATCCAAGGAGGCTATCAAGGTTCTGAAGCAAATCGGAGCCTTCCCTGATGCTGAGAAGGCCAAGGACAGCACTGGCATTCGTCCTGGTAAGGGGAAGATGCGTAACCGTCGCTACATTTCTCGCCGCGGTCCTCTCATTGTTTACGGTACCGAAGGCGCGAAAGCGGTGAAGGCTTTCCGTAACATTCCCGGTGTTGAGGTTGCCAATGTGGAGAGGCTCAACCTTCTGAAGCTTGCACCTGGTGGGCACCTTGGGAGATTCGTCATCTGGACAAAATCTGCTTTCGAGAAGCTCGATTCGATTTATGGGTCGTTTGATAAGCCATCGGAGAAGAAGAAGGGTTACTTGCTTCCAAGGTCAAAGATGGTGAACTCTGATCTTGCTAGGATTATTAACTCTGATGAGGTTCAGAGTGTTGTGAGGCCTATCAAGAAGGATGTGAAGCGTGCCACCCTCAAGAAGAACCCACTGAAGAACCTCAATGTGATGCTCAGGCTCAATCCTTATGCTAAGACTGCCAAGAGGATGGCTCTGCTCGCCGAGGCCCAGCGCCTTCAGGCTAAGAAGGAGAAGCTTGATAAGATGAGGAAGATCGTCTCTAAGGAGGAAGCTTCTGCCATCAAGGCTGCAGGAAAAGCATGGTATCACACCATGGTGTCAGATTCAGATTATACAGAATTCGACAACTTCTCAAAATGGCTGGGTGTTTCACAGTGA 1221 0.5553 MAAAAARPLVTVQALEGDMVADAAATIPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRHALVSAIAASAVPSLVLARGHRIETVPEFPLVVSDSAEGVEKSKEAIKVLKQIGAFPDAEKAKDSTGIRPGKGKMRNRRYISRRGPLIVYGTEGAKAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLARIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAQRLQAKKEKLDKMRKIVSKEEASAIKAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2717 406 Pfam Ribosomal protein L4/L1 family 28 267 IPR002136 GO:0003735|GO:0005840|GO:0006412
Lja1g2717 406 PANTHER BNAC03G35890D PROTEIN 3 406 - -
Lja1g2717 406 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Lja1g2717 406 Coils Coil 343 373 - -
Lja1g2717 406 SUPERFAMILY Ribosomal protein L4 12 268 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lja1g2717 406 Pfam 60S ribosomal protein L4 C-terminal domain 281 353 IPR025755 -
Lja1g2717 406 Gene3D - 4 309 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lja1g2717 406 MobiDBLite consensus disorder prediction 56 95 - -
Lja1g2717 406 MobiDBLite consensus disorder prediction 56 74 - -
Lja1g2717 406 PANTHER 60S RIBOSOMAL PROTEIN L4 3 406 IPR045240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2717 Lja-Chr1 32262636 32265026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2717 1 406 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.512 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2717 K02930 - gmx:100779764 760.755