Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2716 ATGGCTAGGTCTGCCAAAGGCCATCAAGATGAATTGGACGACGACAACGACGAAGACCTCTTCACTGAAAACACCTCTTCCTCTCTCAACAAAGAGAAGGTGGATGAACCCACTAAGGGGAAGAGGGTGAACCCTCATCGTTCCAAGCATTCAGAGACTGAGCAGCGTCGAAGGATCAAAATTAACGAAAGATTTCAGGTTCTGAAAGATCTCATACCTCAAAATGATCAGAAAAGAGATAAGGCCTCCTTGTTGTTGGAGGTTATTCAGTATGTTCAGTTCCTACAGGAAAAGCTACAAATTTATGAACAGTCTCATGAAGGATGGAATCAGGAGCCGACGAAATTAATTCCATGGAGAAATCATCATGGGCCTGCTGAACATACTACAGATCCTTCTCAAGCTATTCAAAACGGGTCTGTTATTGCGAAAAATAATGATATCTCTTCATTACTGCCCCAAAATGTACAGAACCCAATAGAGTCTGACTTCTCAACGACAACTATTCAGAAGGGCCACACCCCTTGTTCAGCTACTGAAAAAGTTCCCATGACGAAGCAAATGCGATTGGACGTGTTTGATCCAGTTGTTAACAGTGGTTTGGTGACCCAGCATGTGCTGGAACCTCTGTCTAATGCGGGCATACCTTCCCATACCGAGCCTCAAGTATGGCTTAGTAAACCAAATAAGGACAAATATATTGTTCCAGATAATACATTGAAGGAACAGGAGGAGCTGACAATTGAAAGTGGATCAGATAGCATTTCCAATGCCTATTCTCAGAGAATATTAGATACTCTCACACAAGCACTGCAGTGCTCAGGGGTGGATTTGTCTCAGGCCAGTGTCTCAGTGCAAATTGATGTCGGTAGACGATCAAATAGCGGGTTGACCCCCTCTACATATAGCTCAAAGGGTCATCAAAACCAGTTTTTGAACAATCAAGGAATGGCATGTTCAGGAGGTGATTATTGCAGTGAGGATTCTGAACAAAGTCAGAAGAGGCTCAGGCGAGAAGCAAGCTAG 1026 0.4366 MARSAKGHQDELDDDNDEDLFTENTSSSLNKEKVDEPTKGKRVNPHRSKHSETEQRRRIKINERFQVLKDLIPQNDQKRDKASLLLEVIQYVQFLQEKLQIYEQSHEGWNQEPTKLIPWRNHHGPAEHTTDPSQAIQNGSVIAKNNDISSLLPQNVQNPIESDFSTTTIQKGHTPCSATEKVPMTKQMRLDVFDPVVNSGLVTQHVLEPLSNAGIPSHTEPQVWLSKPNKDKYIVPDNTLKEQEELTIESGSDSISNAYSQRILDTLTQALQCSGVDLSQASVSVQIDVGRRSNSGLTPSTYSSKGHQNQFLNNQGMACSGGDYCSEDSEQSQKRLRREAS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2716 341 Gene3D - 44 116 IPR036638 GO:0046983
Lja1g2716 341 MobiDBLite consensus disorder prediction 322 341 - -
Lja1g2716 341 CDD bHLH_AtBIM_like 47 120 - -
Lja1g2716 341 SMART finulus 51 101 IPR011598 GO:0046983
Lja1g2716 341 MobiDBLite consensus disorder prediction 29 58 - -
Lja1g2716 341 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Lja1g2716 341 PANTHER TRANSCRIPTION FACTOR BIM3 1 340 - -
Lja1g2716 341 MobiDBLite consensus disorder prediction 1 58 - -
Lja1g2716 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Lja1g2716 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 124 IPR036638 GO:0046983
Lja1g2716 341 Coils Coil 92 112 - -
Lja1g2716 341 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 340 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2716 Lja-Chr1 32198699 32203214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2716 3 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 39.672 2.24e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g2716 HLH 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2716 - - gmx:100791730 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2716 1 32198699 32203214 Lja1g2716 1 32198699 32203214 ECH