Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2690 ATGAGGATGCCAAGAGGAGTTTCTGTTCTTTGTTTTGCAATTTTCTTGGTTTGGAGCTCTGCAAGTGCCTTGCTATCTCCTAAAGGAGTGAACTTTGAAGTGCAAGCTTTAATGGGTATAAAGGAACTTCTACATGATCCTCGTGGTGTTCTAGATAATTGGGATGGGGATGCAGTTGATCCATGTAGCTGGGCCATGGTAACATGTTCAAGTGACAACCTGGTCATTAGCCTGGGCACTCCCAGTCAAAATTTGTCTGGTACTCTATCTGCAACCATAGGCAACTTAACCAATCTTCAGACTGTGTTGCTACAGAATAACAACATAAGTGGACCAATCCCTTCAGCGCTAGGAAAACTTCCCAAGCTTCAAACACTTGATCTCTCTAATAATTCCTTCAGTGGGGAAGTTCCTCCCTCACTGGGTCACCTGAGAAGCCTCCAATACCTGAGGCTCAATAATAACAGTCTTGTTGGTGAATGCCCAGAATCACTGGCTAACATGACTCAGCTTTCTTTTCTAGATTTGTCCTACAACAATCTTAGTGGCCCAGTACCCAGAATTTTGGCCAAATCATTCAGCATTCTTGGCAACCCCCTTGTTTGTGCTACTGGAAAAGAACCAAATTGCCATGGGATCACACTGATGCCCATGTCCATGAATTTAAACAATACTGAAGATGCTTTGCCATCAGGCAAACCGAAAACTCATAAGATGGCCATTGCCTTTGGCTTGAGTCTGGGATGCCTCTGCCTTATACTTCTTGGTTTTGGAGCTTTTCTTTGGTGGAGGCACAAGCATAACCAACAAGCATTCTTTGATGTTAAAGACCGGCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCCATTCAGAGAACTCCAGATTGCTACTCACAACTTCAGCAACAAGAATATACTGGGAAAAGGTGGTTTTGGAAATGTGTACAAAGGAGTTCTCTCAGATGGAACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCCATTGGAGGAGAGATTCAGTTTCAGACTGAAGTTGAAATGATCAGCCTGGCAGTGCACAGAAACCTCCTCAAACTGTATGGATTTTGCATGACACCAACAGAAAGGCTTCTAGTTTACCCCTACATGTCTAATGGCAGTGTTGCTTTGCGTCTGAAGGGTAAGCCAGTCTTGGATTGGGGCACAAGGAAACATATTGCTTTAGGAGCTGCAAGGGGGCTACTCTACCTTCATGAGCAGTGTGATCCAAAGATAATCCACAGGGATGTCAAAGCTGCTAATATTTTGCTTGATGACTATTGTGAAGCTGTAGTTGGAGATTTTGGGCTAGCAAAGCTTTTGGATCACCAAGACTCTCATGTCACAACTGCAGTGAGGGGCACTGTGGGTCATATTGCCCCAGAGTATTTATCCACTGGTCAATCCTCTGAGAAGACCGATGTCTTTGGATTTGGCATTCTCCTTCTTGAGTTAATCACAGGCCAAAGAGCTCTGGAATTTGGAAAAGCAGCTAACCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCTAGAAAAGAAGCTTGAGTTGCTGGTAGACAAGGATCTCAAGAGCAACTATGACCAGATTGAGCTTGAGGAAATGGTTCAAGTGGCTCTCTTGTGCACTCAATACCTCCCAGGCCACAGGCCAAAAATGTCTGAAGTGGTTCGCATGCTCGAAGGTGATGGTTTAGCGGAGAGATGGGAAGCTTCTCAGAGAGCTGACACTAGCAAGTGCAGACCCCATGAGTCCTCTTCATCAGATAGGTACTCTGATCTCACTGATGACTCGCTTTTGTTAGTCCAAGCCATGGAGCTCTCGGGACCCAGATGA 1872 0.4476 MRMPRGVSVLCFAIFLVWSSASALLSPKGVNFEVQALMGIKELLHDPRGVLDNWDGDAVDPCSWAMVTCSSDNLVISLGTPSQNLSGTLSATIGNLTNLQTVLLQNNNISGPIPSALGKLPKLQTLDLSNNSFSGEVPPSLGHLRSLQYLRLNNNSLVGECPESLANMTQLSFLDLSYNNLSGPVPRILAKSFSILGNPLVCATGKEPNCHGITLMPMSMNLNNTEDALPSGKPKTHKMAIAFGLSLGCLCLILLGFGAFLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFPFRELQIATHNFSNKNILGKGGFGNVYKGVLSDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVALRLKGKPVLDWGTRKHIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHLEKKLELLVDKDLKSNYDQIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRADTSKCRPHESSSSDRYSDLTDDSLLLVQAMELSGPR* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2690 623 ProSiteProfiles Protein kinase domain profile. 303 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2690 623 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Lja1g2690 623 Pfam Protein kinase domain 304 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2690 623 SUPERFAMILY L domain-like 33 195 - -
Lja1g2690 623 SUPERFAMILY Protein kinase-like (PK-like) 280 573 IPR011009 -
Lja1g2690 623 PRINTS Leucine-rich repeat signature 123 136 - -
Lja1g2690 623 PRINTS Leucine-rich repeat signature 168 181 - -
Lja1g2690 623 SMART LRR_typ_2 144 167 IPR003591 -
Lja1g2690 623 SMART LRR_typ_2 168 191 IPR003591 -
Lja1g2690 623 SMART LRR_typ_2 120 143 IPR003591 -
Lja1g2690 623 SMART LRR_typ_2 96 119 IPR003591 -
Lja1g2690 623 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Lja1g2690 623 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Lja1g2690 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Lja1g2690 623 MobiDBLite consensus disorder prediction 583 606 - -
Lja1g2690 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 623 - -
Lja1g2690 623 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Lja1g2690 623 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
Lja1g2690 623 MobiDBLite consensus disorder prediction 583 603 - -
Lja1g2690 623 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 9 623 - -
Lja1g2690 623 Pfam Leucine rich repeat 97 157 IPR001611 GO:0005515
Lja1g2690 623 SMART serkin_6 303 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2690 Lja-Chr1 31831091 31835732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2690 1 623 Receptor kinase-like Gene Family AT5G16000 78.006 0.0 994
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lja1g2690 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2690 - - gmx:100798412 1118.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2690 1 31831091 31835732 Lja1g2690 1 31831091 31835732 ECH
Lja2g3206 2 69353441 69357954 Lja1g2690 1 31831091 31835732 PCT