Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2670 ATGTTCCCTAATTCCAGTTACCCTTACCCTTATTTCCCTTCTTCCTCATCTTCTTCTCCTTCACCATACCCTCCTTTCAATTTCCTCAACCCTGGAAATGCTTCAACAAACAACATCTTCCTCCATGACCCTCCTCCTCTTCCTTCTGTCCCCTACACAAACAACACCACCAACACTCACCACCACCATGCCCCTCCAACCTGCTCAGAAACCTTCACCAATTGGGCACTTGCAGATGCAATGCTCAAGCAAGAAAACCTCACTGGTGGGCCCCACCATCACTACAACCTCTCCAACTTCCTCACCAGAAAACTACCAGCAGCAAAAAAACCAGCCAAGAAGGACAGGCACAGCAAGATTCACACCTCTCAGGGCTTGAGGGACAGGAGGGTGAGGCTTTCAATCGAGATCGCGCGAAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGACAAAGCCAGCAATACCCTCGAGTGGCTCTTCAGCAAATCAAACAAAGCAATTGAAGAGCTTTTCAGAAGCAAGCATAGTGATAATAACAATAGCACTGGTGCTTGTGCTGCTGATGGTGATGGTGATGGTGATGATGACAGCTTCTCCTCTTCCTCTTCAGAAGATGAAGTTGTTTCTGTGAAAAGGGCACAGAAAGAAAAAGAACCTTCTGGTGTTCAAGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGGGAAAGGACTAGTAACAAGATGTGCCCTGAAACTGAAAATCCTCAAATGCAGCTTCACCAATTCAGTTCAGAGTTTCAGCCTCATCAGGAACTGCATAGAGATGATGATTTCAAGGTTTTTGAGGAATCCATTGTGATCAAGAGGAAGTTGAAGCAATCATTGATGTCTTCTTCTCATCATCACCAGAACCAAAACATTGGGATCCCTAAGGAAGCAAGTTTCAACAACAACAACAATAGTGAGTGTCCCTCTTCCTTCCCTATGTCTCCAAATTGGGATGCTAGTGGTGCCACTCCACGCTCAAACATTTGTGCAATAGCCAGCGTGAATCTCTCAACAGGGCTTCAAATCTTTGGAAAATCTTGGGAGGAGTGCACCAGTCCTCATCTACACTAA 1113 0.4546 MFPNSSYPYPYFPSSSSSSPSPYPPFNFLNPGNASTNNIFLHDPPPLPSVPYTNNTTNTHHHHAPPTCSETFTNWALADAMLKQENLTGGPHHHYNLSNFLTRKLPAAKKPAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEELFRSKHSDNNNSTGACAADGDGDGDDDSFSSSSSEDEVVSVKRAQKEKEPSGVQAKMKESREKARARARERTSNKMCPETENPQMQLHQFSSEFQPHQELHRDDDFKVFEESIVIKRKLKQSLMSSSHHHQNQNIGIPKEASFNNNNNSECPSSFPMSPNWDASGATPRSNICAIASVNLSTGLQIFGKSWEECTSPHLH* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2670 370 ProSiteProfiles R domain profile. 228 245 IPR017888 -
Lja1g2670 370 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 19 369 - -
Lja1g2670 370 MobiDBLite consensus disorder prediction 209 246 - -
Lja1g2670 370 ProSiteProfiles TCP domain profile. 113 171 IPR017887 -
Lja1g2670 370 Pfam TCP family transcription factor 112 247 IPR017887 -
Lja1g2670 370 MobiDBLite consensus disorder prediction 176 249 - -
Lja1g2670 370 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 369 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2670 Lja-Chr1 31484929 31486838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2670 109 250 TCP Transcription Factor Family AT1G67260 46.667 1.92e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja1g2670 TCP 4.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2670 - - lja:Lj1g3v3116640.2 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2670 1 31484929 31486838 Lja1g5397 1 90386529 90387482 ECH
Lja1g2670 1 31484929 31486838 Lja4g2007 4 20765754 20767695 ECH
Lja1g2670 1 31484929 31486838 Lja1g2670 1 31484929 31486838 ECH
Lja1g2670 1 31484929 31486838 Lja2g3166 2 67837402 67840198 ECH