Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2664 ATGGTTGCCGCCAAGAAAACCAAGAAGACCCATGAGAGCATTAACAACAGGCTCGCTCTGGTGATGAAGAGTGGCAAATATACTCTAGGTTACAAAACTGTTCTCAAATCACTGAGAAGTTCCAAAGGGAAACTGATTATCATTGCCAACAATTGCCCACCTTTGAGGAAGTCAGAGATTGAGTATTATGCTATGTTGGCAAAGGTTGGAGTTCATCACTACAATGGGAACAATGTTGATCTGGGCACTGCATGCGGCAAATACTACAGAGTGTGCTGCCTCAGCATTATCGATCCTGGTGATTCTGATATCATAAAGACATTGCCCAGTGACCAGTAA 339 0.4336 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTLPSDQ* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2664 112 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Lja1g2664 112 Gene3D - 2 108 IPR029064 -
Lja1g2664 112 PANTHER 60S RIBOSOMAL PROTEIN L30 1 112 - -
Lja1g2664 112 PANTHER RIBOSOMAL PROTEIN L30 1 112 IPR039109 GO:0003723
Lja1g2664 112 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
Lja1g2664 112 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Lja1g2664 112 Hamap 50S ribosomal protein L30e [rpl30e]. 12 109 IPR000231 GO:0003723|GO:0003735|GO:0022625
Lja1g2664 112 SUPERFAMILY L30e-like 13 106 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2664 Lja-Chr1 31389072 31390997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2664 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 87.500 9.95e-72 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2664 K02908 - ini:109159740 227.254