Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2656 ATGTCTGCAATGGTTTCAGCTCTTGCTCAAGTCATGGGAACTACCAATCCGAACCAACACATGGTACAATCAACCTCCTTTCCTGTCTCAACCATGGTCAATGAAGAACCTCAGCCCCAACCTCTTCTAGATCAAGAGATCACAAAGAAACCAAGGTACAGGGGAGTGAGACAGAGGCCATGGGGAAAATGGGCAGCAGAAATCCGTGATCCAAAAAAAGCTGCTAGAGTCTGGCTAGGAACCTTTGAAACAGCAGAGGATGCAGCCACTGCATATGACAAAGCTGCACTCAAGTTCAGAGGCACAAAAGCCAAGCTTAATTTCCCTGAAAGAATTCAAGGGAACACTGATGCTAGCTATGTGGTACAACAAGGTTCAGGAAGCAGAAATGTTATTTATACTAATGATGCAACAACTAGTGCTAGTAGTGCCATAATTCAACATGCACATGCTCATGATATTAATGCTCTTCCTCCTTCATTGTCCACTACAAATGAACATGATCACCAAGTTTTCCCAAACCTGTTTCAGTATGCTCAGATTCTTTCAAGTGATGATGCTGAACTACCTTATTACACATCCCATCTTTTCAATCAACAACAACTGCCTTTTAGTTCTCAGTTTTCTACCAATTTGTCTTCAACTTCATCTCCCTCATCCTACTTCTACAACCAGCAGCAACAACAACATGATGAAGAAGGAGATGATGTCACCATGAGCAGTAGTATGTAA 732 0.4221 MSAMVSALAQVMGTTNPNQHMVQSTSFPVSTMVNEEPQPQPLLDQEITKKPRYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAATAYDKAALKFRGTKAKLNFPERIQGNTDASYVVQQGSGSRNVIYTNDATTSASSAIIQHAHAHDINALPPSLSTTNEHDHQVFPNLFQYAQILSSDDAELPYYTSHLFNQQQLPFSSQFSTNLSSTSSPSSYFYNQQQQQHDEEGDDVTMSSSM* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2656 243 MobiDBLite consensus disorder prediction 217 243 - -
Lja1g2656 243 PANTHER DNA-BINDING DOMAIN 40 225 IPR044808 GO:0003700|GO:0009873
Lja1g2656 243 PANTHER - 40 225 - -
Lja1g2656 243 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Lja1g2656 243 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Lja1g2656 243 Gene3D AP2/ERF domain 52 111 IPR036955 GO:0003700|GO:0006355
Lja1g2656 243 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Lja1g2656 243 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Lja1g2656 243 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Lja1g2656 243 CDD AP2 51 110 IPR001471 GO:0003700|GO:0006355
Lja1g2656 243 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2656 Lja-Chr1 31185113 31187548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2656 4 197 AP2-EREBP Transcription Factor Family AT5G13330 46.970 2.58e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g2656 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2656 - - gmx:100796624 261.151