Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2652 ATGTCTTCCGAGCAACCTTCCAAACCCAACATAACCACCGTCGACGGCGAAATTGACGGTGCCGTTAACGGTTCGCCGCCGTTCGCGGCGGCTTCCGATGAGAGGCCCACGGCGAGGCTTCCACGCTGGACAAGGCAGGAGATCCTGGTTCTCATACAGGGTAAAGCTGATGCTGAAAGCCGGTTCAAACCGGGCCGTGCTGCCGGTTCGGCTTTCGGTTCGAGCGAACCGAAGTGGGCGCTGGTCTCGTCGTACTGCAAGAAGCACGGCGTGAACCGGGAACCGGTTCAGTGCCGGAAGCGGTGGAGCAACCTCGCCGGCGACTATAAGAAGATCAAGGAGTGGGAGTCGTCGGTGAAGGATGAAACGGAGTCGTTTTGGCTGATGAGGAATGATTTGAGGAGGGAGAGGAAGTTGCCGGGGTATTTTGACCGGGAGGTGTATGATGTTCTCGACGCGCCGGCGTTGCCGGTTGCTGCTACGGTGGTTCCGGCGATTGAGATGGCGCCCGAGGCGGTGGCTCGTGAGGAGGAGGTTCACATTTATGATAGTAATCGGAGGGTGGCTGGTGAAGATGGGTTGTTTTCGGATTGTGAGAAGGATGAGGTTTTGGCTTCTGTCAAGAGTGTGGTTGCTCCTGTTCCTATCTCAGAGAAGCAATATCTACCACTCCTCCGTGGCTGCCAAGTGGAAAGCAATGGCCAAGGTACCCCCAATGAGAAACAACCAGCCTCAAACCCAGAAGTGGGTTCCACATCTCAAGGGGAACGGAAGAGGAAGCGGTTAGCGACCGATGCAGCAGAGGAGGAAACTTTGCAAACTCAATTAATTGATGTCTTGGAGAAAAATGGGAAGATGCTACGCGATCAGCTTGAGGCTCAGAACATGAATTTCCAGTTGGATCGCCAGCACCAGAAAGACACTGCAAGTAGCATAATTGCTGTGCTTGATAAGCTTGCAGATGCTCTAGGGAGAATTGCTGATAAGTTGTAG 993 0.5408 MSSEQPSKPNITTVDGEIDGAVNGSPPFAAASDERPTARLPRWTRQEILVLIQGKADAESRFKPGRAAGSAFGSSEPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESSVKDETESFWLMRNDLRRERKLPGYFDREVYDVLDAPALPVAATVVPAIEMAPEAVAREEEVHIYDSNRRVAGEDGLFSDCEKDEVLASVKSVVAPVPISEKQYLPLLRGCQVESNGQGTPNEKQPASNPEVGSTSQGERKRKRLATDAAEEETLQTQLIDVLEKNGKMLRDQLEAQNMNFQLDRQHQKDTASSIIAVLDKLADALGRIADKL* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2652 330 MobiDBLite consensus disorder prediction 1 40 - -
Lja1g2652 330 Gene3D - 43 111 - -
Lja1g2652 330 CDD GT1 41 113 - -
Lja1g2652 330 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 7 330 - -
Lja1g2652 330 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 7 330 - -
Lja1g2652 330 MobiDBLite consensus disorder prediction 229 267 - -
Lja1g2652 330 Coils Coil 277 297 - -
Lja1g2652 330 ProSiteProfiles Myb-like domain profile. 35 106 IPR001005 -
Lja1g2652 330 Pfam Myb/SANT-like DNA-binding domain 42 129 IPR044822 -
Lja1g2652 330 MobiDBLite consensus disorder prediction 253 267 - -
Lja1g2652 330 MobiDBLite consensus disorder prediction 230 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2652 Lja-Chr1 31123432 31128053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2652 42 114 Trihelix Transcription Factor Family AT1G33240 32.877 8.17e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja1g2652 Myb_DNA-bind_4 5.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2652 - - gmx:100788594 482.641