Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2651 ATGCAATTCGCCAAGCTCGATGACTCTCCTATGTTCCGCAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTGAGAGAGAGAAGTTTAAAATTTTACAAAGGATGTAGAAAATACACTGAAGGACTTGGGGAGGCATATGATGGAGATATTGCATTTGCAAGTTCCCTAGAAACTTTTGGTGGTGGGCATAATGATCCAATCAGTGTGGCCTTCGGAGGCCCTGTTATGACCAAATTTACCATAGCCTTAAGAGAAATTGGGACATACAAGGAAGTCCTTCGGTCACAGGTTGAGCACATGTTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTGCAAGAGGTCAAGGAAGCACGGAAGCGCTTTGACAAAGCTAGCCTTATTTATGACCAGACTCGTGAAAAGTTTCTATCACTGAGAAAAGGCACAAAAACTGATGTAGCTACTGCTCTTGAAGAGGAGCTTCATAGTTCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTGAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGTTATGAATTGTTGCACCAAATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCAAATTATGAACAAGCAGCTCTCAATGAAAGAATGCAGGATTACAAACGGCAGATTGATCGAGAGAGTAGATGGGCTTCAAATGGTTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCTATTGGTAGAAGTTCACATAAAATGATAGAGGCAGTCATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCCTCAAACTTAAGGGGAGACTGGAAAAGGAGGTTTTTCGTTCTTGATAGCCGGGGAATGCTGTATTACTACCGTAAACAAGTCGGCAAATCATCTGGGTCTAGTACTCAGCACTCTGGTCAGAGGAATAGTTCTGAGATTGGTTCTGGTATTTTAAGTCGATGGCTATCTTCTTCTCATCACCATCATCATCATGGTGGCGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATCAAAGTTGATGCCGACCAATCAGATTTGCGTTTTTGCTTCAGGATCATTTCACCAACAAAGAACTATACTTTGCAGGCAGAAAGTGCACTGGACCAAATGGATTGGATTGAAAAGATCACAGGGGTTATTGCCTCGTTGTTGAGTTCTCAGATTCCTGAAAGGATGTTACCTGCAAGTCCAATGGGAAGCGGTCATAATCGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTCGACCACACAACTGTTGAAGAATATGCTGATAGAAGTTTTGCTTCTGCGCATATGGAGCGCCCCTCAAGAAGTATGCACCAGCAGCGGTCCTGTACTAAAAGTGAGAAGCCCATTGATGTGTTGCGAAAAGTTATTGGAAATGACAAATGTGCTGATTGTGGTGCTCCTGAACCTGATTGGGCATCTCTAAATCTTGGTGTTCTTGTTTGTATTGAGTGTTCTGGTGTTCATCGAAACCTAGGTGTTCACATATCAAAGGTCAGATCTCTCACATTGGATGTGAAAGTGTGGGAACCTTCTGTAATAAGTTTGTTTCAGTCTCTTGGGAATACTTTTGCTAACTCTGTCTGGGAGGAACTATTGCAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCTCTACAGGCTTTAGCAAGTCTGATAAACAAATGATGCTTTTCATCACCAAACCTAGTCAATCTGATTCTCTCTCTGTCAAGGAAAAGTTCATCCATGCAAAGTATGCTGAGAAGATTTTTGTTCGCAAGCCCAAGGACAATCAATACCGTCTCCTGGTGGCGCAGCAGATCTGGGAGGCTGTTCGTGCTAACGACAAAAAAGCTGTATACCGCTACATTGTTCACTCTGACATTGATGTTAATGCTGTTTATGAGCAAACTGGCTCCAACTCTTTAACCCTTGCCAAAGTAATGCTATTACAAGAGCAGACAAGCCTTGATCGCAGCTCTAGTTTAGCGGGAAACGCATTGGACTGGTCCTCTAATAACCATTTGAGTTCGGTGGGTGCGAAAGAAGGGCAGGCCATGGATAATCTAGATGGGTGCACACTACTTCACCTTGCTTGTGAAACCGGAGACATTGGCATGTTGGAGCTCCTCCTACAATATGGTGCAAATGTTAATGCAACTGATTCGAGAGGTCAAACACCACTACATCGCTGTATTCTCAAAGGAAAATCTATACTTGCTAGATTACTGTTATCAAGGGGGGCCGATCCTCGAGCTGTGGATGACCAGGGAAGAACCCCTATTGAGCTTGCTGCAGAATCAAATGCTGATGACCATGCTCCATTGGCTGATTCTAATGGATGA 2493 0.4272 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASSLETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTREKFLSLRKGTKTDVATALEEELHSSRSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQDYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQVGKSSGSSTQHSGQRNSSEIGSGILSRWLSSSHHHHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERMLPASPMGSGHNRSTSESSSFESSDFDHTTVEEYADRSFASAHMERPSRSMHQQRSCTKSEKPIDVLRKVIGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVSTGFSKSDKQMMLFITKPSQSDSLSVKEKFIHAKYAEKIFVRKPKDNQYRLLVAQQIWEAVRANDKKAVYRYIVHSDIDVNAVYEQTGSNSLTLAKVMLLQEQTSLDRSSSLAGNALDWSSNNHLSSVGAKEGQAMDNLDGCTLLHLACETGDIGMLELLLQYGANVNATDSRGQTPLHRCILKGKSILARLLLSRGADPRAVDDQGRTPIELAAESNADDHAPLADSNG* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2651 830 MobiDBLite consensus disorder prediction 249 270 - -
Lja1g2651 830 ProSiteProfiles PH domain profile. 292 432 IPR001849 -
Lja1g2651 830 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Lja1g2651 830 PRINTS HIV Rev interacting protein signature 557 578 IPR001164 GO:0005096
Lja1g2651 830 PRINTS HIV Rev interacting protein signature 515 534 IPR001164 GO:0005096
Lja1g2651 830 PRINTS HIV Rev interacting protein signature 534 551 IPR001164 GO:0005096
Lja1g2651 830 Pfam PH domain 294 431 IPR001849 -
Lja1g2651 830 Pfam Putative GTPase activating protein for Arf 506 643 IPR001164 GO:0005096
Lja1g2651 830 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Lja1g2651 830 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Lja1g2651 830 ProSiteProfiles Ankyrin repeat profile. 773 805 IPR002110 GO:0005515
Lja1g2651 830 ProSiteProfiles Ankyrin repeat region circular profile. 740 771 - -
Lja1g2651 830 SMART arf_gap_3 503 648 IPR001164 GO:0005096
Lja1g2651 830 ProSiteProfiles Ankyrin repeat region circular profile. 773 805 - -
Lja1g2651 830 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 824 - -
Lja1g2651 830 SUPERFAMILY ArfGap/RecO-like zinc finger 503 643 IPR037278 -
Lja1g2651 830 SMART ANK_2a 740 769 IPR002110 GO:0005515
Lja1g2651 830 SMART ANK_2a 773 802 IPR002110 GO:0005515
Lja1g2651 830 Pfam BAR domain of APPL family 6 232 - -
Lja1g2651 830 CDD ArfGap 506 635 - -
Lja1g2651 830 CDD PH_ACAP 295 436 - -
Lja1g2651 830 MobiDBLite consensus disorder prediction 800 830 - -
Lja1g2651 830 MobiDBLite consensus disorder prediction 253 269 - -
Lja1g2651 830 Gene3D - 285 442 IPR011993 -
Lja1g2651 830 Gene3D Arf GTPase activating protein 483 647 IPR038508 -
Lja1g2651 830 SMART PH_update 293 434 IPR001849 -
Lja1g2651 830 ProSiteProfiles Ankyrin repeat profile. 740 772 IPR002110 GO:0005515
Lja1g2651 830 SUPERFAMILY PH domain-like 293 448 - -
Lja1g2651 830 Gene3D - 648 825 IPR036770 -
Lja1g2651 830 Coils Coil 227 247 - -
Lja1g2651 830 Pfam Ankyrin repeats (many copies) 743 794 IPR002110 GO:0005515
Lja1g2651 830 ProSiteProfiles ARF GTPase-activating proteins domain profile. 503 648 IPR001164 GO:0005096
Lja1g2651 830 PANTHER CENTAURIN/ARF 1 824 IPR045258 GO:0005096
Lja1g2651 830 MobiDBLite consensus disorder prediction 450 467 - -
Lja1g2651 830 MobiDBLite consensus disorder prediction 442 469 - -
Lja1g2651 830 CDD BAR_SFC_plant 14 215 IPR035670 -
Lja1g2651 830 SUPERFAMILY Ankyrin repeat 667 821 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2651 Lja-Chr1 31101105 31110508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2651 500 586 C2H2 Transcription Factor Family AT3G07940 51.648 2.70e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2651 K12489 - gmx:100789134 1477.61