Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2650 ATGCTGGAGCCTCTGAGATTGTTTTTTGGTTGTGAATTTGCTTGTTGTGCTTTGATGTTTAGGAAAAGACACAACCCTTTTTCTCTTGCAAGGGAGTTCTTGGTATTTCAACCTCTTCTTCTTGTTCTGGTATTGTTCACCTTGCAACATAACACTGTGCATTGCCATGGAAGATTTAGCAAACACATCTCTTCAGAACCATCGCCACCACCATCAGAATACAAGGATAACTCTAGGAAGATCATTTTCAGCATAGTTTTAGGAGCAGTCACTGGACTAGTTTGTTCTGTTCTCTTTGCATTTGTGGTTCGTTATGTGGTTCAGTATCTGAACAGAACACCAATCCTCAAAGGCCCTGTCATATTCTCCCCAAAAATTGCCCCCAAAACACTCCAATCAGCTTTGGCAAAAGAAAACCACTTGCTAGGTTCAAGTCCAAATGGGAAATACTACAAAACTGTGCTTGACAATGGGCTGACAATTGCAGTCAAAAAGCTAACACAGGAACAAAATTCTCCAGAGGCAAAGAAAAAATCAGTGAAGAGGCAGATACAAGCAGAGCTAGAGATTCTTGCAAGGTTAAGACATAGGAACTTGATGAGTCTGAGGGCTTATGTTCGTGAACCTGATGGATTTTCATTGATGTATGATTATGTGTCCACTGGGAGTCTTTGTGATGTGATGAGTAGAGTGAGGGAGAATGAGTTGGTGCTTGGTTGGGAAGTTAGGCTGAGGGTTGCTGTTGGTGTGGTGAAGGGTCTTCAGTATCTTCACTTCACTTGTGTGCCTCAGATTCTGCACTACAACTTGAAGCCAACTAATGTGATGTTGGATGCAGAGTTTGAACCCAGATTGGGAGATTATGGATTGGCTAAGCTTCTACCAAACTTGGATAGAGGGACATCTGTCTACAGCCCTCCTGAATGTTTCCATAATTGCAGCAGGTACACGGACAAGAGTGACATATTCAGTTTTGGCATGATCCTTGGTGTTTTGTTAACTGGCAAGGACCCTACAGATCCATTCTTTGGAGAAGCAGCAAGTGGGGGGAGCTTGGGGTGTTGGCTGAGGCACTTGCAACAAGCAGGTGAAGCAAAAGAAGCTTTAGATAAGAGCATTTTGGGGGAAGAAGGGGAAGAAGATGAGATGCTCATGGCTTTCAGGATTGCTGCTGCATGCCTCTCTGATGTGCCTGCAGATAGGCCTTGTAGTGATGAGCTTGTTCACATGCTAACACAACTGCACAGTTTTTGA 1254 0.4362 MLEPLRLFFGCEFACCALMFRKRHNPFSLAREFLVFQPLLLVLVLFTLQHNTVHCHGRFSKHISSEPSPPPSEYKDNSRKIIFSIVLGAVTGLVCSVLFAFVVRYVVQYLNRTPILKGPVIFSPKIAPKTLQSALAKENHLLGSSPNGKYYKTVLDNGLTIAVKKLTQEQNSPEAKKKSVKRQIQAELEILARLRHRNLMSLRAYVREPDGFSLMYDYVSTGSLCDVMSRVRENELVLGWEVRLRVAVGVVKGLQYLHFTCVPQILHYNLKPTNVMLDAEFEPRLGDYGLAKLLPNLDRGTSVYSPPECFHNCSRYTDKSDIFSFGMILGVLLTGKDPTDPFFGEAASGGSLGCWLRHLQQAGEAKEALDKSILGEEGEEDEMLMAFRIAAACLSDVPADRPCSDELVHMLTQLHSF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2650 417 CDD STKc_IRAK 142 414 - -
Lja1g2650 417 Gene3D Phosphorylase Kinase; domain 1 125 218 - -
Lja1g2650 417 ProSiteProfiles Protein kinase domain profile. 136 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2650 417 Gene3D Transferase(Phosphotransferase) domain 1 219 416 - -
Lja1g2650 417 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE CORYNE 36 417 - -
Lja1g2650 417 Pfam Protein kinase domain 138 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2650 417 PANTHER - 36 417 - -
Lja1g2650 417 SUPERFAMILY Protein kinase-like (PK-like) 139 411 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2650 Lja-Chr1 31093999 31097818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2650 82 414 Receptor kinase-like Gene Family AT2G31880 34.930 3.56e-62 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Lja1g2650 Pkinase 7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2650 - - gmx:102664172 645.966