Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2649 ATGTCTTCTCTGCTTTGGAGTTCCATTGCTATGTGTGTAGCAGTCCTTCAGCTATGTTGCTTTGGATTTGCACACCCGTCATCCTCCTCTCACCCTGATAGGATCACTCTCTTACCAGGTCAACCCCAAGTTGAGTTCAATCAGTTTTCAGGTTATGTGACAGTTGATGAGAAAAACCAAAGAGCACTTTTCTTCTACTTTGCTGAAGCTGAGAAGGATGCAGCTTCCAAGCCCCTTGTTCTATGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTGGGGGTTGGTGCATTTGCAGAGAATGGACCATTTAGGCCTAAAGGAGAGGGCTTGGTTAGGAACCAATTTAGCTGGAACAGAGAGGCAAATATGCTGTACTTGGAATCTCCAATTGGAGTGGGGTTCTCTTACTCAGCTGATACTTCATCTTATATGGGAGTGAATGACAAGATTACTGCCAAGGATAACCTGATGTTCTTGCAAAACTGGTTAGTGAAGTTTCCAGAATACAGGAACAGGAGTTTGTTCATTGTAGGAGAAAGCTATGCAGGTCATTATGTTCCTCAACTGGCTGAGCTTATGCTCCAACTCAACAAAAAGGAGAAGCCGTTCAACTTAAAAGGAATTGCTCTTGGTAACCCACTTCTAGAATTTTCAACAGACTTCAATTCAAGAGCTGAGTTCTTCTGGTCTCATGGATTAATCTCAGACACAACATATGGAATGTTCACTTCTGTTTGTAACTACTCAAGATATGTGAGGGAATACTATGGTGGTTCTGTTTCTCCTATCTGTTCACGTGTGATGAGCCAAGTTACTACAGAAACTAGTAGATTTGTTGACAAGTATGATGTGACCCTTGATGTTTGTATTTCTTCAGTGTTTTCACAAACCAAAGTCCTCAGTCCCCAGCAAGGTACTGAAACCATAGATGTATGTGTGGAAGATGAAGCAGCCAATTATCTGAATAGGAAAGATGTTCAATCTGCTTTACATGCACATCTTGTTGGGGTGCAAAGATGGTCTGTTTGCAGCAATGTCTTGAATTATGAGTTCCGTGACTTGGAGATACCAACAATCACAGCTGTAAGCAAGCTAGTCAAGGCAGGATTACCTGTATTGGTATACAGTGGTGATCAGGATTCAGTTATCCCATTGACTGGAAGTAGAACTTTGGTGCATCAATTGGCAAAAGAACTAGGATTGAAGACCACAGTGCCATACAGGGTCTGGTTTGAAGGGAAACAGGTGGGTGGGTGGACTCAGGTTTATGGTAACATCCTTTCATTTGCCACCATCAGGGGAGCATCACATGAAGCTCCATTTTCACAGCCTGAGAGATCACTTGTGCTGTTCAGGTCCTTCTTACAAGGCCATGCTCTTCCAGAAGAATTTTGA 1395 0.4301 MSSLLWSSIAMCVAVLQLCCFGFAHPSSSSHPDRITLLPGQPQVEFNQFSGYVTVDEKNQRALFFYFAEAEKDAASKPLVLWLNGGPGCSSLGVGAFAENGPFRPKGEGLVRNQFSWNREANMLYLESPIGVGFSYSADTSSYMGVNDKITAKDNLMFLQNWLVKFPEYRNRSLFIVGESYAGHYVPQLAELMLQLNKKEKPFNLKGIALGNPLLEFSTDFNSRAEFFWSHGLISDTTYGMFTSVCNYSRYVREYYGGSVSPICSRVMSQVTTETSRFVDKYDVTLDVCISSVFSQTKVLSPQQGTETIDVCVEDEAANYLNRKDVQSALHAHLVGVQRWSVCSNVLNYEFRDLEIPTITAVSKLVKAGLPVLVYSGDQDSVIPLTGSRTLVHQLAKELGLKTTVPYRVWFEGKQVGGWTQVYGNILSFATIRGASHEAPFSQPERSLVLFRSFLQGHALPEEF* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2649 464 SUPERFAMILY alpha/beta-Hydrolases 39 460 IPR029058 -
Lja1g2649 464 Gene3D - 359 457 - -
Lja1g2649 464 Gene3D alpha/beta hydrolase 30 291 IPR029058 -
Lja1g2649 464 Gene3D - 312 347 - -
Lja1g2649 464 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Lja1g2649 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Lja1g2649 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Lja1g2649 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Lja1g2649 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 427 440 IPR001563 GO:0004185|GO:0006508
Lja1g2649 464 PANTHER CARBOXYPEPTIDASE 6 462 - -
Lja1g2649 464 Pfam Serine carboxypeptidase 39 457 IPR001563 GO:0004185|GO:0006508
Lja1g2649 464 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 462 IPR001563 GO:0004185|GO:0006508
Lja1g2649 464 ProSitePatterns Serine carboxypeptidases, histidine active site. 427 444 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2649 Lja-Chr1 31088050 31091886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2649 317 460 Calmodulin-binding Proteins AT2G22960 26.389 2.88e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2649 K16297 - gmx:100805130 820.076