Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2645 ATGACCATGGTTCCTTCTCAAAACGGCAAACAAATCAGTAATTATGTTTTTTACAACACAAGTGCTATGAACCAAGTTGAAACTGAAGGAAGCTACAATTGCTTATTAGGATCTGATTTTTTTGTGAGGCACATGGCTGAGGAGGAATCATCATCAAGAGGCACCAACACCACTAGTACAACTCATCATCATCATAACCAATACCAAAACCAAATCCAACCTGAGCCTGAAGCTGAAGCTGCAGGTTCTACCTCAAAGGAAGAAGGAGAAGGAGCAAACAATAATAACAATAGCAACTGGCTTCAGTTGAGCATAGGCTTTCATCAGAGCCAGACGACCGTGCCAGCCACCAAACACAACCGTGATCACCACCACGACCACCGCGACCGAGCTGGCTCAACAGCGGCTCCAACAACCGGTTCGGGGCTTGTGGAGCTTGATTTGCTGCCACCAACAGAGCGCCATTTTTCCCGGACTGGTTTGGAGTCACTGCAGCCAACCATTTTCCCGGTGGCGGCCGGGAGGGGTTTTCAACTAGGAGGGTCTAGTGCTTTTGGTTCTTCTTTGCTTTTTGAACAAATGACAACAACGTTGTTGTCTTCTTCATCTTCTTCCATTTCCATGTCCATGCCTAGTGGTCCAACCTTTGGTCACCACCAACCTCATCAAGAAATGATGAACTTGACATTTGGTCCACCACAACCTCATTCCATGGCACTCATGCCTTCTTCTTCATCTTTCATTCCATCTTTTTCTACTTCTTCCTCCTCGTGTTCTTCTTTGAGGCCTCCTTTAGGATCTTACTATCCATCACCGTTAATTCATCCTTTCCCTTCTTCATCTTCTCCTTCTCCTTCTGGGTTTGATCAATTAGACGTGGCTGGACCGAGTTCCGACATCACCGTTCGAGTTGTTGATCCTCCTAAGAGACCTCATTCTGGAATTTGGTTCATGCTACAAGCCTCACAAAACCAATCGAAAGAACCATTCCTGCCACAAATACCTAAAAACTACCTTAGGATCAAAGATGGAAGGATGACAGTTCGGTTGCTGTTGAAGTATTTGGTTAGCAAACTCAAACTGGAGAGCGAATCAGAGATAGAGATAACATGCAGAGGGCAGCAACTTTTACCTTTCTTGACGTTGCAGCATGTGAGGGATAACATTTGGACTCAGAGGGACACCACAAGGCCTTTGCTTTCAGATTCATCAACCACAGATCATGTAATGGTGCTCCATTATGGTAGAGCCACTGCATAA 1260 0.454 MTMVPSQNGKQISNYVFYNTSAMNQVETEGSYNCLLGSDFFVRHMAEEESSSRGTNTTSTTHHHHNQYQNQIQPEPEAEAAGSTSKEEGEGANNNNNSNWLQLSIGFHQSQTTVPATKHNRDHHHDHRDRAGSTAAPTTGSGLVELDLLPPTERHFSRTGLESLQPTIFPVAAGRGFQLGGSSAFGSSLLFEQMTTTLLSSSSSSISMSMPSGPTFGHHQPHQEMMNLTFGPPQPHSMALMPSSSSFIPSFSTSSSSCSSLRPPLGSYYPSPLIHPFPSSSSPSPSGFDQLDVAGPSSDITVRVVDPPKRPHSGIWFMLQASQNQSKEPFLPQIPKNYLRIKDGRMTVRLLLKYLVSKLKLESESEIEITCRGQQLLPFLTLQHVRDNIWTQRDTTRPLLSDSSTTDHVMVLHYGRATA* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2645 419 PANTHER RING FINGER PROTEIN 17 417 - -
Lja1g2645 419 MobiDBLite consensus disorder prediction 47 99 - -
Lja1g2645 419 MobiDBLite consensus disorder prediction 114 144 - -
Lja1g2645 419 PANTHER RING FINGER PROTEIN 17 417 IPR044171 GO:0007275
Lja1g2645 419 MobiDBLite consensus disorder prediction 117 132 - -
Lja1g2645 419 Gene3D - 308 414 - -
Lja1g2645 419 MobiDBLite consensus disorder prediction 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2645 Lja-Chr1 31040862 31051954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2645 328 414 C3H Transcription Factor Family AT3G23060 39.785 1.01e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2645 - - lja:Lj1g3v3138970.1 669.848