Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2644 ATGGCATTCCTCTCTCCTCAATCCCAAGAACAAGGAGGCGCCACCGTCGCCGTCGCCGTCGCCGCCACCGGCGAAGAAGACACCAACATCGATATCCACACCACGCGTGGCACCCCCATTCGCTACCTCCCCCTCGATCACCTCTACTCCTCCACCTCACCTTGCAGTGGCTCCACCATGTCCAAAAAGGTCAAGGCTCACCGCAAACTCGAACCCGCAATCAGCAGCGACGACATCAGTACCACCACAACCAGCAGCAATAGCGACGACGGTGACCCGCCGCTCGAGAAACCGGCGTCGGATGCTCTGAAGCCACCTCTTATCTATGTCTACTATCGCCGACGTAAGAGGCGTCCGTCGCCAACGACGCCGTCGAGGGAGAATGGGGTTTCTGAGAGTAAGGTGCTGAAGAGGAGGAAAATTGGGACCGCTGAGTTGGAGAAATTGGGGGTGGATTTGAACGGTGTTAGGAACCACCTTGACGGGCCGAGATTGAGGGAATGTCGCACTCAAATTGGGAATTCTGGTACTGGCAACAACAGTAGCAACACCAAGTGTGGTGGTGGTGGTGCTTCCTTGGAGAATTTTCCTAAGCTGATTCCTGAATCTCGCACTGCGAAGAAATGGGTCACGTTGAGTTTTGATAATGCTGATCCTGAGGCATTTGTTGGGTTGCGATGCAAGGTTCATTGGCCCATGGATTTAAAATCGTATGCTGGCTATGTCAAAGGTTATGATATAGAAGCCAAGATACATCATATCAAGTATGATGATGGTGAGGAGGAAAATTTAATTCTTTCAAATGAAAATGTAAAATTCCATGTTTCCCGTGACGAGATGAAGCATTTAAAATTGAGCTATGCCAAAGTTCGTGACAGTAATGTCTCTGATTATGATGTTGAAGAGATGCTTGCACTGGCTGCAAGTTTGGATGATTGTCAAGACTTTGAGCCCGGGGATATCATATGGGCCAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCTAGCAACTGTAGGGGTTTAAGAATGTTTATAGGAGGAAGATCGGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGATTGCAACAGGTGAAATCATTTCTTAGTGGACTTCTTACTGATCTACACTCAAAGTGCAAAAAACTTAGTTTTATTGAAGGATTAGAAGAGGCAAAAAGGTATTTAAGTCAACAGAAGCTTCCCTTGGAGATGCTAGAATTGCAGAAAAGATGTACAGCTGATGAATATAACAATGTAAGTGGAGAAGATGGAGGATGTACAGATTCTGGTGAAGATTGTTTAAATGATAAAGGAACTTGCGCGTCACTTCAAAACATCGAAACTTTTCCTTATGAAGTAGGAGCAGACTTGCAGATTCTAAGACTTGGAAAAATAGTTGAAGGTAGTGCATCTTTTGGAGATGGAAGATCCATCTGGCCTGAAGGGTACACAGCAGTGAGAAAGTTTATGTCACTTACTGATCCTAAAGTATCTGTCCCTTATAAGATGGAGGTGCTGAGAGATCCAGAATCCAAATTCCGACCTCTATTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGATTATACACCATCTGCTTGCTGGAATCAAGTATACAAAAGGATAAAGAAAATGGAAAAGGATATCTGCAATGGTTCTGTTGCTGAAGGCGGGATTGAAAGGGGCTATGAATCTGGGTCTGATATGTTTGGGTTCTCCAATCCTAGAGTGGCTAAACTTATACAGGGATTATCTAAATCTAAAGTCTCTTCGAAGAACTCAAAGTGCAAGTTAGGTTCCAGAAGTTATAATGGCTTGCCTGTTGGTTATAGACAGGTTCATATTAATTGGTTTGATCTTGATAAGTGCAATGTGTGCCACATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTACGGAGTACTGGAACCTGTTAATGGAGTACTATGGTTGTGTAACTTGTGTCGTTCGGGTGCTCCTCCCCCACCTTGTTGCTTATGCCCCCTCATAGGTGGTGCCATGAAGCCTACGACTGATGGCCGATGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATATCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATTAGTAAGGACCGCTGGAAGTTGTTATGCAGTATATGTGGTGTATCATATGGTGCCTGCATCCAATGTTCAAACAGTTCATGTCGGGTAGCTTATCATCCACTCTGTGCTCGTGCTGCTGGTCTCTGTGTTGAGCTTGAGGATGAGGACAGACTCTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATTCGCTTACTTTCTTTCTGCAAGAAACATAGGCAGCCATCTCATGAACCATCTGGTGCTGATGAACGCATTGTTCGAGTTGTGGCTCCGTGCTCAGACTATGAACCACCACCCAATGCATCTGGTTGTGCTCGAAGTGAGCCATATGATTACTTTGGAAGGAGGGGCCGAAAAGAACCTGAAGCACTTGCAGCTGCATCTTTGAAACGTTTGTTTGTAGAGAATCAATCTTACTTAGTTGGTGGACTCTGCCAGCATGGATTGCTAAACAACCCAGAGCCTTCTGGCAGAGGAGTTTGCCCTAAATTCTTTTGTAGCCAACAAAGGCTGAGAACCTCTCTGATTGACTCTTCAAACAGCATACTTTCTACTGCTGAGAAATATAAGTACATGAGGGAAACCTTTCGGAAACAGCTAGCGTTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGCGGAGACATGGTGATTGAATATACCGGTGAACTTGTTCGACCTACTATAGCTGACCGCAGAGAGCACTTTATATACAATTCTTTGGTGGGTGCTGGAACATACATGTTTCGGATTGACGATGAACGAGTCATCGATGCTACTAGAGCCGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCACCAAATTGCTATTCAAGAGTTGTAAGTGTTGATGGCGATGAACATATTATAATATTTGCAAAGAGGGACATTAAACAATGGGAAGAGCTTACATATGATTACAGATTTTTCTCAATTGACGAACGACTTCCTTGTTACTGTGGCTTCCCAAAATGCCGAGGTGTAGTAAATGATACTGAGGCAGAAGAGCGAGCTGCTACCCTATTTGCACCACGGAGTGAATTAATAGATTGGACAGGAGAATGA 3303 0.4457 MAFLSPQSQEQGGATVAVAVAATGEEDTNIDIHTTRGTPIRYLPLDHLYSSTSPCSGSTMSKKVKAHRKLEPAISSDDISTTTTSSNSDDGDPPLEKPASDALKPPLIYVYYRRRKRRPSPTTPSRENGVSESKVLKRRKIGTAELEKLGVDLNGVRNHLDGPRLRECRTQIGNSGTGNNSSNTKCGGGGASLENFPKLIPESRTAKKWVTLSFDNADPEAFVGLRCKVHWPMDLKSYAGYVKGYDIEAKIHHIKYDDGEEENLILSNENVKFHVSRDEMKHLKLSYAKVRDSNVSDYDVEEMLALAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESLASNCRGLRMFIGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKLSFIEGLEEAKRYLSQQKLPLEMLELQKRCTADEYNNVSGEDGGCTDSGEDCLNDKGTCASLQNIETFPYEVGADLQILRLGKIVEGSASFGDGRSIWPEGYTAVRKFMSLTDPKVSVPYKMEVLRDPESKFRPLFRVTVDGGEQFNDYTPSACWNQVYKRIKKMEKDICNGSVAEGGIERGYESGSDMFGFSNPRVAKLIQGLSKSKVSSKNSKCKLGSRSYNGLPVGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGVLEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADIKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELEDEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSHEPSGADERIVRVVAPCSDYEPPPNASGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQSYLVGGLCQHGLLNNPEPSGRGVCPKFFCSQQRLRTSLIDSSNSILSTAEKYKYMRETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPTIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVVSVDGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLPCYCGFPKCRGVVNDTEAEERAATLFAPRSELIDWTGE* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2644 1100 SUPERFAMILY SET domain 934 1073 IPR046341 -
Lja1g2644 1100 Pfam PWWP domain 319 406 IPR000313 -
Lja1g2644 1100 Pfam F/Y rich C-terminus 525 600 IPR003889 GO:0005634
Lja1g2644 1100 Pfam PHD-zinc-finger like domain 688 809 - -
Lja1g2644 1100 CDD ePHD_ATX1_2_like 695 809 IPR041956 -
Lja1g2644 1100 Pfam SET domain 947 1053 IPR001214 GO:0005515
Lja1g2644 1100 MobiDBLite consensus disorder prediction 53 136 - -
Lja1g2644 1100 ProSiteProfiles PWWP domain profile. 318 381 IPR000313 -
Lja1g2644 1100 Pfam F/Y-rich N-terminus 467 516 IPR003888 GO:0005634
Lja1g2644 1100 ProSiteProfiles Zinc finger PHD-type profile. 632 683 IPR019787 -
Lja1g2644 1100 SMART PWWP_4 316 379 IPR000313 -
Lja1g2644 1100 SMART fyrc_3 527 616 IPR003889 GO:0005634
Lja1g2644 1100 CDD SET_SETD1-like 924 1072 - -
Lja1g2644 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 812 IPR013083 -
Lja1g2644 1100 SMART PostSET_3 1060 1076 IPR003616 -
Lja1g2644 1100 SMART PHD_3 744 810 IPR001965 -
Lja1g2644 1100 SMART PHD_3 634 681 IPR001965 -
Lja1g2644 1100 Gene3D - 460 601 - -
Lja1g2644 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 680 IPR013083 -
Lja1g2644 1100 ProSiteProfiles Post-SET domain profile. 1060 1076 IPR003616 -
Lja1g2644 1100 Gene3D - 216 268 - -
Lja1g2644 1100 PANTHER PHD FINGER PROTEINS 23 1098 - -
Lja1g2644 1100 SMART fyrn_3 475 519 IPR003888 GO:0005634
Lja1g2644 1100 Pfam PHD-finger 647 681 - -
Lja1g2644 1100 CDD PHD_ATX1_2_like 634 680 IPR042010 -
Lja1g2644 1100 SUPERFAMILY FYVE/PHD zinc finger 627 696 IPR011011 -
Lja1g2644 1100 MobiDBLite consensus disorder prediction 75 91 - -
Lja1g2644 1100 Gene3D - 306 417 - -
Lja1g2644 1100 ProSitePatterns Zinc finger PHD-type signature. 635 680 IPR019786 -
Lja1g2644 1100 SUPERFAMILY Tudor/PWWP/MBT 312 413 - -
Lja1g2644 1100 SMART set_7 936 1060 IPR001214 GO:0005515
Lja1g2644 1100 ProSiteProfiles FYR domain FYRN motif profile. 460 519 IPR003888 GO:0005634
Lja1g2644 1100 ProSiteProfiles SET domain profile. 936 1054 IPR001214 GO:0005515
Lja1g2644 1100 Gene3D SET domain 892 1087 IPR046341 -
Lja1g2644 1100 ProSiteProfiles Extended PHD (ePHD) domain profile. 686 810 IPR034732 -
Lja1g2644 1100 ProSiteProfiles FYR domain FYRC motif profile. 523 609 IPR003889 GO:0005634
Lja1g2644 1100 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 23 1098 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2644 Lja-Chr1 30987476 31020083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2644 635 780 C2H2 Transcription Factor Family AT3G14740 39.735 3.10e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja1g2644 zf-HC5HC2H_2 3.6e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2644 - - gmx:100808923 1793.86