Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2638 ATGACTCAGGCGGTGGAAGTGTTGAATCGGTACGGGACGGATCTGGTGGGAGAACCGAGGGGTTCGGATTCGGAGTGTTTGGCAGGTTTTGAGTGTTTTCTGAACGTGGTGAGGGCATTGGGAATGGGATCATGCATCTCGGAGGTTGGGGCTGGTGGTGGTTCCCCTCCTCTCCTCACTTATGCGCAGGAATCCAACTTGGACGGCGGGAAGAAGAGGAGGTTGAGGGGTTCCTCTTCATTTGACTACAAAGTGCCTGGGAGGATGTTTTTGAATGGGTCAAGCGATGTCGCATCCATGTACTGCAAGCAAGGTAAAAAAGGGATCAACCAAGATGCTATGCTTGTTTGGGAGAACTTTGGTTCAAGGGAGGACACCATTTTTTGTGGTGTTTTTGATGGTCATGGACCTTATGGCCATAGGGTTGCGAAGAAAGTCAGGGATTCTTTCCCTTTAAAGCTCATTTCACAACTGGAATTGCATCATAAGAATAAAGATGAACACAACGGTCACAATAGTGCTGCTGGAAGTTACAATTCCGAAGAGCAATTTAAACTGGTTGATGAGAAACCTAGTCCCGTTGATCATGAGCTTGATGGAACAAATAGTATTTTGGCACTGAGAGAATCTTTTCTAAAGGCTAGTAAGATTATGGACAGAGAGCTGAAGCTGCATCGTGAGATTGATTGTTTTTGCAGTGGGACTACAGCAGTTACTTTGGTCAAGCAGGGGCTGAATCTTGTTGTCGGAAATGTTGGGGATTCAAGAGCTATATTGGGTACCCGAGATCATGATGATTCTCTTATTGCTGTTCAGTTGACCATTGACCTTAAGCCAAATCTTCCAAAGGAAGAAGAGAGGATAAAGCTTCGTAAAGGAAGGGTCTTTTGCCTTCAGAATGAACCTGATGTGCCTCGAGTTTGGCTGCCCAACACTGATTTCCCAGGTCTAGCTATGGCACGAGCTTTTGGAGATTTTTGCCTTAAGGACTTTGGACTGATTGCTGTTCCTGATGTCTCATATCACCACCTTACTGAAAAGGATGAATTTGTTGTGTTAGCAACAGATGGGATTTGGGATGTTTTATCCAACGAAGAAGTTGTGGACATTGTGGCATCTTCTCCACGGTCTACTGCTGCTCGCGTCCTGGTTGAAACAGCTGCTAAGGCATGGAGGTCAAAATTCCCATTCTGTAAGGTTGATGATTGTGCCGCAGTTTGCCTCTTCTTGAATTCAGATTCAAGTGACAAGTTGACACCGGAGGCAGCAACCGACCAGCTTGAGCAGTCATCTCTACTTGGTGAGAATGGAATTGGAGTGGAAGCTGAAAAATAG 1335 0.4577 MTQAVEVLNRYGTDLVGEPRGSDSECLAGFECFLNVVRALGMGSCISEVGAGGGSPPLLTYAQESNLDGGKKRRLRGSSSFDYKVPGRMFLNGSSDVASMYCKQGKKGINQDAMLVWENFGSREDTIFCGVFDGHGPYGHRVAKKVRDSFPLKLISQLELHHKNKDEHNGHNSAAGSYNSEEQFKLVDEKPSPVDHELDGTNSILALRESFLKASKIMDRELKLHREIDCFCSGTTAVTLVKQGLNLVVGNVGDSRAILGTRDHDDSLIAVQLTIDLKPNLPKEEERIKLRKGRVFCLQNEPDVPRVWLPNTDFPGLAMARAFGDFCLKDFGLIAVPDVSYHHLTEKDEFVVLATDGIWDVLSNEEVVDIVASSPRSTAARVLVETAAKAWRSKFPFCKVDDCAAVCLFLNSDSSDKLTPEAATDQLEQSSLLGENGIGVEAEK* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2638 444 ProSiteProfiles PPM-type phosphatase domain profile. 97 410 IPR001932 -
Lja1g2638 444 SMART PP2C_4 91 408 IPR001932 -
Lja1g2638 444 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 42 419 - -
Lja1g2638 444 PANTHER ALPHABET, ISOFORM E-RELATED 42 419 - -
Lja1g2638 444 CDD PP2Cc 97 410 IPR001932 -
Lja1g2638 444 Pfam Protein phosphatase 2C 124 387 IPR001932 -
Lja1g2638 444 Gene3D - 94 413 IPR036457 -
Lja1g2638 444 SUPERFAMILY PP2C-like 95 411 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2638 Lja-Chr1 30927413 30932613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2638 42 428 PP2C-type Phosphatase Gene Family AT3G02750 53.452 1.88e-145 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2638 - - lja:Lj1g3v3150040.3 811.601