Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2631 ATGGTCGGAGAAGGAGAGAGTCCCGCTATCGGAATCGACCTCGGAACCACCTACTCCTGCGTCGGAGTGTGGCAGAACGACCGTGTCGAAATCATCCCCAACGACCAGGGAAACCGAACCACCCCCTCTTATGTTGCTTTCACCGATTTCGAGCGCTTGATCGGTGATGCCGCCAAGAACCAGGTCTCCAGGAACCCCATCAACACCATCTTCGATGCGAAGCGTTTGATTGGAAGGAAATTCTCGGATGATTCAGTTGAGAGTGACATGAAGCTATGGCCATTCAAGGTCATTTCCGGTCCTGTCGACAGGCCCATGATTGTTGTTAACTACAAGAATGAGGAGAAGCAATTCACTGCTGAGGAGATTTCCTCCATGGTCCTCATCAAGATGCGTGAGATTGCCGAGGCTTATCTTGGTTCCACCGTGAAGAATGTCGTTGTCACTGTCCCAGCATACTTCAATGACTCTCAACGCCAGGCTACCAAGGACGCAGGTGTCATCGCGGGCCTAAATGTCATGCGTATCATCAACGAACCCACTGCTGCTGCCCTTGCCTATGGCCTTAACACGGGGGCCGCCTCCCTAGATTATGGGAAGAACGTGTTGATTTTTGACCTTGGGGGTGGTACTTTTGATGTCTCTCTTCTAATAATTTCTAATGGTCTCTTTCATGTTCAAGCCACTTCCGGAGACACCCATCTTGGAGGTGAGGACTTTGATAACAGGATGGTTAACCATTTTGTTGAGGAGTTCAAGAGGAAGCACGAGAAGGATATTAGTGGGAATCTGAGGGCTTTAAGAAGGTTGAGGATTGCATGTGAAAGGGCAAAGAGGACTCTCTCCTCCACAAAACATACCACCATTGAGATTGACTCATTGTATAAAGGTGTTGACTTCTACACTACAATCACTCGTGACAGGTTTGAAGAGCTCAACTTGGACCTCTTTAGGAGTTGCATTGAGACTGTTGAGCGGTGTCTAAAGGACTCTAAGATGGACAAGAGCAGTGTCCATGATATTGTTCTAGTTGGTGGGTCTACTAGGATCCCAAAAGTGCAGTCACTGATGCAAAATTTCTTCAATGGGAAGGAGCTCTGCAAGAGCATTAGCCCTGAAGAGGCTGTTGCTTGTGGAGCTGCTGTTCAGGCTGCTATCTTGACTAAAGAGGATACTAAGACGATTCAGAAATTTTTGTTGATGGATGCCACACCCCTTTCCCTTGGTGTGGAAATTGTTGGTGGTGTCATGTCTGTACTCATTGAAAAGAACAAAACGATTCCTTTCACAAAGGAGCAGGTTTTCTCGACCTACTCAAACAACCAGCCTGGTGTGTCAATCAAGGTGTACGAGGGTGAAAGTATCTGTAGCAGGGACAATTACTTGTTGGGTAAATTTGAGCTTTCTGGCATTCCTCCTGCTCCAAGAGGTGTTCCTCAGATCAATGTTTGCTTTCATATTGATATTAATGGTATCTTGAATGTCTCTGCTGAGGACAAGACTACAGGGAATAAGAAAAATATCATTATCACCAATCACAAGGGAAGGCTCTCTAAGGAGGAGATTGAGAAGATGGTGCAGGAGGCGGAGAAGTACAATTCTACAAAAGATGCTCCAGATCAACACTTGAAGGCACAAGTAGAACATGATACTTGCCATTATATTACTGCACGATGTATCCCATCTCCATCAGGTGAAAAGCCAGATCCATCAGAACACAAGGTGTCCTCAACTCCATGCGTGGAGTCCCTTATGGAAAATCTAGGTGCACATGTAGAGGAGTTAATCTCTTATGGAAAATCTGGGTCCTCCAATTCTACAAAAGAAGCCTCAGATCAACACTTTGAGGCACTAGTAGAACATCACATTACAATACCAACCCCAAGTTTACAAGCCTTCCCTTCTAGAAACATGAGGTATTATTTTAAATCTACATAA 1938 0.4561 MVGEGESPAIGIDLGTTYSCVGVWQNDRVEIIPNDQGNRTTPSYVAFTDFERLIGDAAKNQVSRNPINTIFDAKRLIGRKFSDDSVESDMKLWPFKVISGPVDRPMIVVNYKNEEKQFTAEEISSMVLIKMREIAEAYLGSTVKNVVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAALAYGLNTGAASLDYGKNVLIFDLGGGTFDVSLLIISNGLFHVQATSGDTHLGGEDFDNRMVNHFVEEFKRKHEKDISGNLRALRRLRIACERAKRTLSSTKHTTIEIDSLYKGVDFYTTITRDRFEELNLDLFRSCIETVERCLKDSKMDKSSVHDIVLVGGSTRIPKVQSLMQNFFNGKELCKSISPEEAVACGAAVQAAILTKEDTKTIQKFLLMDATPLSLGVEIVGGVMSVLIEKNKTIPFTKEQVFSTYSNNQPGVSIKVYEGESICSRDNYLLGKFELSGIPPAPRGVPQINVCFHIDINGILNVSAEDKTTGNKKNIIITNHKGRLSKEEIEKMVQEAEKYNSTKDAPDQHLKAQVEHDTCHYITARCIPSPSGEKPDPSEHKVSSTPCVESLMENLGAHVEELISYGKSGSSNSTKEASDQHFEALVEHHITIPTPSLQAFPSRNMRYYFKST* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2631 645 Gene3D - 71 126 - -
Lja1g2631 645 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 1 545 - -
Lja1g2631 645 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 538 IPR029047 -
Lja1g2631 645 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lja1g2631 645 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 386 560 IPR029047 -
Lja1g2631 645 CDD HSPA1-2_6-8-like_NBD 9 388 - -
Lja1g2631 645 Gene3D - 10 385 - -
Lja1g2631 645 ProSitePatterns Heat shock hsp70 proteins family signature 3. 341 355 IPR018181 -
Lja1g2631 645 SUPERFAMILY Actin-like ATPase domain 8 190 IPR043129 -
Lja1g2631 645 ProSitePatterns Heat shock hsp70 proteins family signature 2. 204 217 IPR018181 -
Lja1g2631 645 Gene3D - 192 367 - -
Lja1g2631 645 Gene3D Actin; Chain A, domain 4 236 319 - -
Lja1g2631 645 SUPERFAMILY Actin-like ATPase domain 199 388 IPR043129 -
Lja1g2631 645 PANTHER HEAT SHOCK PROTEIN 70KDA 1 545 IPR013126 GO:0005524|GO:0140662
Lja1g2631 645 PRINTS 70kDa heat shock protein signature 8 21 - -
Lja1g2631 645 PRINTS 70kDa heat shock protein signature 210 220 - -
Lja1g2631 645 PRINTS 70kDa heat shock protein signature 338 354 - -
Lja1g2631 645 PRINTS 70kDa heat shock protein signature 397 416 - -
Lja1g2631 645 PRINTS 70kDa heat shock protein signature 478 494 - -
Lja1g2631 645 PRINTS 70kDa heat shock protein signature 36 48 - -
Lja1g2631 645 PRINTS 70kDa heat shock protein signature 370 390 - -
Lja1g2631 645 PRINTS 70kDa heat shock protein signature 58 66 - -
Lja1g2631 645 PRINTS 70kDa heat shock protein signature 146 166 - -
Lja1g2631 645 Pfam Hsp70 protein 9 579 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2631 Lja-Chr1 30841159 30843529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2631 1 548 Calmodulin-binding Proteins AT3G12580 77.920 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2631 K03283 - twl:119981104 860.522