Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2621 ATGAAAAGGTCTGAGAATGACAAAAGCAATTTGGTGGGAAGTAGTTCTGAGCAAGAGAGCCACATCCATAAGAAAAAGGGGAGGAAAGATATTGAAGTGATGGATGGTAATGTTGCTGATAGTGAAGAGGTGCATGTCTTTGATGAGAAGCAACAAAGCAAGATGAAGAAAAGAAAAAATTATGATGATGTTTTACCAACTGGAATACGGGAAGTGGGTTCTTCGAAACGGAGCAAAAAAGGCAAAATGACAGAGGATGGTGAGTTAAAAAACAGTGAAGGTGGTCATAGAACTGAAGAGGAAGATGATGACCAAGGTCAGAAGATGGAGAAGAAGAAGAAGGAACTGAGTGAAGAAAGCCAACACAATGAATATGATGGGTTTAAGAGTAATGAAGGTGGAGATGATGACCAAGGGAAGAAGATGAAGAAGAAAAATAAGAAGAAACTGAGTGAAGAAAGCCAACAAAATGAGTGTGATAGGTTTAAAAGCAATGAAGGTGAAGATGATGACCAAGGGAAGAAGATGAAGAAGAATAAGAAGAAAAAACTAATTGAAGAAAGCAAAAGTAAGGAAGAGGATAACAAGTTTAGAAGCAATGAAGGTGAAGATGGTGACCAAGGCAAGATGATGAAGAAAAAGAAACTGAGGGACAAGAGAAAAAATAAGAACAGTGAGTTTAACAGCAATGGAGGTGGTTCCTCTTCGGCTAGAGTCAAGGCAGGTGATGCTAATGCTCACGGTGTTGTCACTGCAGTTGGTGATCAAAGCAAGAATATGAAGACAAAAAAGAAAGCCAAGGAAGATACTGGTGAATCTTCTAACCCTGCAGCATATGATGGAACATCCAAACCCAAACGTGTAACTTTTTCTGATCAAGTGGAGGTTTGTGATGATATTTTAGTGCGTGGGAAAAGGTTTACACCAGAAGAAGATGAGAAGATCAAAGAGGCTGTTTTTGACTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTAGACATGATTCTCCATTGCAAATCACATCCTGAAGTTAGAGATTGTTGGAAGGAAATTGGAGCAGTCTTGCCTAAGAGGCCTCATATCAGCGTGTATTATCGTGCTCATATTCTGTTCGAAAGGGATGAGACGCGCAAGTGGACACCAGATGAGTTTGAAGTTTTACGAAAGCTACAGAATCAGCATGGATCTGATTGGAAAAAAATAGCTGGAGTTTTAGGTAAACATCCTGTTCATGTTAAGGATGCATGGCGGAGAATAAGGCAAACCGATACAAACAAAGGACGTTGGACCCAAGATGAGTATCAACAGTTATTTGATTTAGTAAACAAAGATCTACGCGCAAGAGCTGCAGAGGAATGTAGAAAATCAAAACATGGTATGTTGCGAGATAATGTTAGTTGGGAGGCAATCAGTAACAAATTCGGTGCGAGAAATAGTGCACGGTGCTGCCTAAAGTGGTATAAGCAATTAACATCACCTATGGTTGCTGATGGTGTGTGGAGTGATACAGATGACTACCGCCTGCTAAATGCTTTATATACTTTGGATGCTTACTCAATGGAAGAGGTGGACTGGGACAATCTGCTTGAGCACAGGTCTGGTGATATGAGCCGAAAAAGATGGAACCAAATGGTGCAATATATTGGGCAACATGGAACAAAGTCATTTGCTGAGCAGGTGGAAATTCTTGCTAAGAGATTTTGCCCTGACTTATTGGAAGCAAGAGAGGCCTTTGATAGCAAACCTGTGGTTGGTTAA 1761 0.4043 MKRSENDKSNLVGSSSEQESHIHKKKGRKDIEVMDGNVADSEEVHVFDEKQQSKMKKRKNYDDVLPTGIREVGSSKRSKKGKMTEDGELKNSEGGHRTEEEDDDQGQKMEKKKKELSEESQHNEYDGFKSNEGGDDDQGKKMKKKNKKKLSEESQQNECDRFKSNEGEDDDQGKKMKKNKKKKLIEESKSKEEDNKFRSNEGEDGDQGKMMKKKKLRDKRKNKNSEFNSNGGGSSSARVKAGDANAHGVVTAVGDQSKNMKTKKKAKEDTGESSNPAAYDGTSKPKRVTFSDQVEVCDDILVRGKRFTPEEDEKIKEAVFDYIESHGLGDEGLDMILHCKSHPEVRDCWKEIGAVLPKRPHISVYYRAHILFERDETRKWTPDEFEVLRKLQNQHGSDWKKIAGVLGKHPVHVKDAWRRIRQTDTNKGRWTQDEYQQLFDLVNKDLRARAAEECRKSKHGMLRDNVSWEAISNKFGARNSARCCLKWYKQLTSPMVADGVWSDTDDYRLLNALYTLDAYSMEEVDWDNLLEHRSGDMSRKRWNQMVQYIGQHGTKSFAEQVEILAKRFCPDLLEAREAFDSKPVVG* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2621 586 MobiDBLite consensus disorder prediction 18 65 - -
Lja1g2621 586 ProSiteProfiles Myb-like domain profile. 493 546 IPR001005 -
Lja1g2621 586 SMART sant 376 423 IPR001005 -
Lja1g2621 586 SMART sant 497 548 IPR001005 -
Lja1g2621 586 SMART sant 303 374 IPR001005 -
Lja1g2621 586 SMART sant 426 493 IPR001005 -
Lja1g2621 586 Gene3D - 381 419 - -
Lja1g2621 586 MobiDBLite consensus disorder prediction 73 176 - -
Lja1g2621 586 CDD SANT 379 420 IPR001005 -
Lja1g2621 586 Coils Coil 174 194 - -
Lja1g2621 586 SUPERFAMILY Homeodomain-like 471 549 IPR009057 -
Lja1g2621 586 MobiDBLite consensus disorder prediction 183 212 - -
Lja1g2621 586 Coils Coil 99 119 - -
Lja1g2621 586 ProSiteProfiles Myb-like domain profile. 422 491 IPR001005 -
Lja1g2621 586 PANTHER GB|AAC33480.1 19 585 - -
Lja1g2621 586 Gene3D - 420 496 - -
Lja1g2621 586 ProSiteProfiles Myb-like domain profile. 379 421 IPR001005 -
Lja1g2621 586 SUPERFAMILY Homeodomain-like 378 438 IPR009057 -
Lja1g2621 586 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 378 425 IPR017930 -
Lja1g2621 586 MobiDBLite consensus disorder prediction 1 285 - -
Lja1g2621 586 Pfam Myb-like DNA-binding domain 380 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2621 Lja-Chr1 30743669 30746122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2621 379 547 MYB Transcription Factor Family AT4G32730 25.146 3.73e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja1g2621 Myb_DNA-bind_6 5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2621 - - gmx:100785842 628.246