Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2613 ATGTCTGGAGGAGATGCAGAGAAGGGAAGAAGAGTCGCCACCATTGGTGTTGCAACCTTGCTAATGGTGGCTATGGTTGTGGCCGTCACAGTTGGCATCAACAGCAATCATCATAAGAGCGAAGCAAACAATGATATAGAAGACAACATCAAGGACAATAGCCGCGTCGCGGCCACGGTAAACGCAGTCCAAACCCTTTGCCATCCCACTGATTACAAGAAGGAATGTGAGGAAACCTTGATAGCTGAGGCTGACAACACCACAGACCCAAAAGAACTAATCAAAATTGCCTTCAACATTACAATTAAGAAACTTGGTGACAAACTCAAGGAAACTGATCTGTTGCATGAGGTTGAGAAGGAGCCAAGAGCCAAGATGGCACTTGACTCGTGCAAACAACTCATGGATCTTTCAATTGAGGAGTTAACAAGGTCAATTGATGGAATAGGTGAGTTTCATCTCAAGAATCTTGACAAAATCCTCATGAATGTTAAGGTTTGGCTCAGTGGTGCAGTCACATACCAAGATACATGCTTGGATGGGTTTGAGAACACCCTAGTGAAGCTGCTTGCTGACGCCGTATCAGAATGGAACATTACAAAATTAACCGGGCGTCGCCTTCTTCAGGATTCTGAGACTCCCTCATGGGTTGAAATTGATCATCGTAGACTCCTTGATGCAAAGAAAAATACATTAAAACACAAGCCTAATGTGACTGTAGCCATAGATGGAAGTGGAGATTTCAAGAGCATCAATGAGGCATTGGAGAAGGTTCCTAAGCATAACAAAAAACCATTTGTGATTTACATCAAGGAGGGGATTTACCATGAGTATGTTGAAGTTAACAAGCATATGACCCATGTTGTGTTTGTTGGTGATGGTGGCAAGAAGACACGAATCACTGGCAACAAAAACTTCATAGATGGAATCAACACTTACAGAACCGCAACTGTTGCTATCCAAGGAGATCATTTTGCTGCCATCAATATGGGTTTTGAGAACTCTGCAGGCCCCCATAAGCATCAAGCAGTAGCTCTAAGGGTTCAAGCTGACAAGTCCATATTCTATAATTGTTCAATGGATGGGTATCAAGATACACTCTATGCACACACCATGCGCCAATTCTATAGGGATTGTACTATTTCAGGTACTATAGACTTTGTCTTTGGTAATGGGCTAGTCGTTTTTCAGAAATGCACTTTCGTGGTCCGAAAGCCTATGGCAAACCAGCAATGCATTGTAACTGCACAAGGTAGGAAAGAGAGGCAGGGACCATCTGGAATAGTAATTCAAGGGGGCTCCATTGTATCTGACCCTGAGTTCTACCCGGTGAGGTTTGATAACAAGGCCTACCTCGCCCGTCCGTGGAAGAATTACTCGAGGACCGTCTTCATGGACACCTACATTGATGATTTGATTCATCCTGATGGATATTTGCCATGGCAAGGATTAAATGGACCTTCTGGCATGGACACTTGCTTCTATGCTGAGTACCATAACACCGGCCCCGGTTCTGACAAATCAAAGCGCGTAAATTGGGCTGGGATTTGGAACCTAAACTCAAAGGCTACACATTGGTTCTCACCATCCAAATTCTTCCATGGAGATGATTGGATTGAGGTTGCTGGAATTCCTTATTTTTCTAGCATTCCAGGACACTACAAACACAAGAAGACATCACTTAATTGGTGA 1692 0.4368 MSGGDAEKGRRVATIGVATLLMVAMVVAVTVGINSNHHKSEANNDIEDNIKDNSRVAATVNAVQTLCHPTDYKKECEETLIAEADNTTDPKELIKIAFNITIKKLGDKLKETDLLHEVEKEPRAKMALDSCKQLMDLSIEELTRSIDGIGEFHLKNLDKILMNVKVWLSGAVTYQDTCLDGFENTLVKLLADAVSEWNITKLTGRRLLQDSETPSWVEIDHRRLLDAKKNTLKHKPNVTVAIDGSGDFKSINEALEKVPKHNKKPFVIYIKEGIYHEYVEVNKHMTHVVFVGDGGKKTRITGNKNFIDGINTYRTATVAIQGDHFAAINMGFENSAGPHKHQAVALRVQADKSIFYNCSMDGYQDTLYAHTMRQFYRDCTISGTIDFVFGNGLVVFQKCTFVVRKPMANQQCIVTAQGRKERQGPSGIVIQGGSIVSDPEFYPVRFDNKAYLARPWKNYSRTVFMDTYIDDLIHPDGYLPWQGLNGPSGMDTCFYAEYHNTGPGSDKSKRVNWAGIWNLNSKATHWFSPSKFFHGDDWIEVAGIPYFSSIPGHYKHKKTSLNW* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2613 563 CDD PMEI-like_3 65 204 - -
Lja1g2613 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 203 IPR035513 -
Lja1g2613 563 PANTHER PECTINESTERASE 205 551 - -
Lja1g2613 563 TIGRFAM PME_inhib: pectinesterase inhibitor domain 56 186 IPR006501 GO:0004857
Lja1g2613 563 PANTHER PECTINESTERASE 11 185 - -
Lja1g2613 563 SUPERFAMILY Pectin lyase-like 235 547 IPR011050 -
Lja1g2613 563 Pfam Plant invertase/pectin methylesterase inhibitor 62 196 IPR006501 GO:0004857
Lja1g2613 563 Gene3D - 231 550 IPR012334 -
Lja1g2613 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 188 IPR035513 -
Lja1g2613 563 Pfam Pectinesterase 237 536 IPR000070 GO:0030599|GO:0042545
Lja1g2613 563 SMART PMEI_2 58 209 IPR006501 GO:0004857
Lja1g2613 563 PANTHER PECTINESTERASE 11 185 - -
Lja1g2613 563 PANTHER PECTINESTERASE 205 551 - -
Lja1g2613 563 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2613 Lja-Chr1 30692981 30694861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2613 5 550 Carbohydrate Esterase AT3G05610 47.368 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2613 K01051 - gmx:100815272 928.702