Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2601 ATGGTGGGCAACGACGATGCTGCTCACGCCGCCGCTCCGTGCCACCTCCCCACCTCCCGGAAGATGTTCTGGCGGTCAGCGTCGTGGTCATCTGCTCGCACAGCCGCCGCTGGGAACTCCTCCGGCGACTCAGATAAGGGTTTTGCTGATCCTGATTCCGGCGGTGATGCCGCGAGTCGGAGGTTCACTCAGCCGCCATTGACGCCTCGATCGCAGCAAAATTGCAAGGCGCGGTCGTGCTTGCCGCCGCTGCAGCCGCTTTCGATTGCTCGCCGGAGTCTCGATGAGTGGCCGAAGGCGAGTTCTGATGACATTGGGGAGTGGCCGCAACCCCCCATAACCCCTGGTGGGAGAGGTAACAATAATAGCAGTAGTAGTAGTGGTAACAATGGGGAAAGGTTGAAACTTGATTTATCTTCTATTCAGCAGAGCAACCCTGATCATAAGAATAATGGTGGGCTTGTGAAGAGGGATAAGATTGCATTTTTTGATAAGGAATGTTCCAAAGTTGCTGATCATGTGTATCTTGGTGGTGATGCTGTTGCTAGGGATAGGGAGATTTTGAAGAAGAATGGGATAACTCATGTTTTGAATTGTGTTGGTTTTGTGTGTCCTGAGTACTTCAAAGCTGATTTTGTGTATAGGACTTTGTGGTTGCAGGATAGTCCTTCTGAGGATATTACTAGTATTTTGTATGATGTGTTTGATTACTTTGAGGATGTTAGGGAGCTGAATGGGAGGGTGTTCGTGCATTGTTGTCAAGGGGTGTCTAGGTCCACTTCATTGGTCATTGCTTACCTCATGTGGAGGGAAGGGCAGAGTTTTGAGGATGCTTTTCAGTTTGTGAAGGCAGCAAGAGGTATTGCTGATCCCAACATGGGTTTTGCTTGCCAATTGGTGCAGTGCCAGAAAAGAGTTCATGCCTTCCCTCTCAGCCCTAGCTCTTTGCTGAGAATGTATAGAATTGCTCCTCACTCCCCTTATGATCCCTTGCATCTTGTCCCCAAAATGTTGAGTGATCCATCTCCTGCTGCTCTGGACTCAAGGGGTGCATTCATAGTGCACATTCCTTCTGCAATATATGTTTGGATTGGGAAAAATTGTGAGGCCATCATGGAAAGGGATGCCAGAGGGGCTGTGGGTCAGATTGTCCGTTATGAGAGAGTGCAAGGACCTACTATAATGATCAAGGAAGGTGAGGAACCAGCTTACTTTTGGGATGCTTTTTCCAAGTTTTTGCCTTTGATGGACACATCTGGGAATAGAGTAGGAAGTAGCAGACCAGGTGTTAAAATCTTTCCTGGTGAGAGGAAAGTAGACTCATATGATGTTGATTTTGAAGTTTTCAAAAGAGCTATAACAGGAGGTTTTGTGCCTCCATTTGCATCATCAGAGGATGAGCATGAAACCCATCTTCCTGCAAGAGAGAGTAGTTGGAGTGCTTTAAGGGGTAAAGTTTCCTCCGCTAACACGAAGGAGTTTGTCTCAGCCCCTAAGTCATCCATTCCTCGGGTACATTCAGATTCCATGTTGTATATTCATACATCAGCAAAGTCATCTCCATCCCCGTCAATATCATTGTCGTCATCATCTTTATCATCATATTCTTCACCCTCTTTTGTCTCTTCAGATTCCATTTCTTCTGAGTCTAGCACTCGCTCAAAGTTTTTGCCAGCATTGTCCCCAGATTCTTCCTCTGTAGTTTTGAGTTCATTTCCAGCATCTACATCTTTGTCTAACTTTTCTAATTTGTCTCTCTCATCAAATACTACTTCTCAAGCAGTGTCAAACAGTATATCAAATCCATGCTCTCAGTCAACCTCTTTGCCATTGAAGAAACCATCAACTACTTCCCTTGCTGAACGCAGAGGTAGTTTGTCAAAATCTTTGAAGTTGCCGCCAATTAATGATAAGACGCGAGTGAGAGATAAATCATCAACTTTGCATGCTAGTCGGGAGCATCCTGTTCTTGTTAACGGCAACTCTAGCCATTCGCAACAATCAGATAGCATATATTTTTATTTTGAGTCCAACAAACAGGTTGAGGATGGAGCAGTGGATTCAATTCAACAGTGTGAAGTGGCATTATGTCCAAGCATTTTTGATAGCATATATGACAAGGATTCTTCGTTTCTTGGGAACTGTGCTGAGCCTTTGATAGATAGTTCCTCAACAGAAGACTTAAAGTCTACATCATATAGAGGAACTAATAAGAAGGGGTTAACAAAAACTTTAGTATTTCACTGGCCCAGTTTAGAAAAGATTGAGAGATTTGTTGCTGGTCATTTGGATTCTAAAGATGCTTTTGTCATATTCTCGCCAAGTATGAATGTGCACACAGGAAACGTTTTGTATTTTTGGGTAGGGAAGTCTTTCAAGAGTGATGCTTCACAAGTTCAGTTGGATAGTGATGAACAGTATGATTTTCTTCAAGCTGTTGACTGGAATCAAATTGGTTCTGAACTCCTCACCCAGTTTAGTTTGCCAAAGAACACAATCATCAAGGTTGTTAAAGAGAATGAAGAACCGCGAGAGTTTCTTTCTTTACTGAGTTCATTGTAG 2562 0.4415 MVGNDDAAHAAAPCHLPTSRKMFWRSASWSSARTAAAGNSSGDSDKGFADPDSGGDAASRRFTQPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKASSDDIGEWPQPPITPGGRGNNNSSSSSGNNGERLKLDLSSIQQSNPDHKNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDREILKKNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVRELNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQFVKAARGIADPNMGFACQLVQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLSDPSPAALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAVGQIVRYERVQGPTIMIKEGEEPAYFWDAFSKFLPLMDTSGNRVGSSRPGVKIFPGERKVDSYDVDFEVFKRAITGGFVPPFASSEDEHETHLPARESSWSALRGKVSSANTKEFVSAPKSSIPRVHSDSMLYIHTSAKSSPSPSISLSSSSLSSYSSPSFVSSDSISSESSTRSKFLPALSPDSSSVVLSSFPASTSLSNFSNLSLSSNTTSQAVSNSISNPCSQSTSLPLKKPSTTSLAERRGSLSKSLKLPPINDKTRVRDKSSTLHASREHPVLVNGNSSHSQQSDSIYFYFESNKQVEDGAVDSIQQCEVALCPSIFDSIYDKDSSFLGNCAEPLIDSSSTEDLKSTSYRGTNKKGLTKTLVFHWPSLEKIERFVAGHLDSKDAFVIFSPSMNVHTGNVLYFWVGKSFKSDASQVQLDSDEQYDFLQAVDWNQIGSELLTQFSLPKNTIIKVVKENEEPREFLSLLSSL* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2601 853 SUPERFAMILY Actin depolymerizing proteins 712 851 - -
Lja1g2601 853 MobiDBLite consensus disorder prediction 115 133 - -
Lja1g2601 853 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 225 286 IPR000387 GO:0016311|GO:0016791
Lja1g2601 853 MobiDBLite consensus disorder prediction 27 80 - -
Lja1g2601 853 MobiDBLite consensus disorder prediction 635 650 - -
Lja1g2601 853 Gene3D Severin 317 413 IPR029006 -
Lja1g2601 853 MobiDBLite consensus disorder prediction 595 624 - -
Lja1g2601 853 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 307 IPR029021 -
Lja1g2601 853 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 847 - -
Lja1g2601 853 MobiDBLite consensus disorder prediction 595 663 - -
Lja1g2601 853 SUPERFAMILY Actin depolymerizing proteins 313 416 - -
Lja1g2601 853 Pfam Dual specificity phosphatase, catalytic domain 174 304 IPR000340 GO:0008138|GO:0016311
Lja1g2601 853 Gene3D Protein tyrosine phosphatase superfamily 142 308 IPR029021 -
Lja1g2601 853 ProSitePatterns Tyrosine specific protein phosphatases active site. 250 260 IPR016130 GO:0016311|GO:0016791
Lja1g2601 853 MobiDBLite consensus disorder prediction 95 133 - -
Lja1g2601 853 SMART dsp_5 166 305 IPR020422 GO:0006470|GO:0008138
Lja1g2601 853 ProSiteProfiles Dual specificity protein phosphatase domain profile. 166 308 IPR020422 GO:0006470|GO:0008138
Lja1g2601 853 MobiDBLite consensus disorder prediction 64 79 - -
Lja1g2601 853 MobiDBLite consensus disorder prediction 27 41 - -
Lja1g2601 853 CDD DSP 167 301 - -
Lja1g2601 853 PANTHER MKPA PROTEIN 1 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2601 Lja-Chr1 30439983 30445063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2601 1 202 Protein tyrosine phosphatase (PTP) family AT3G55270 60.099 3.77e-65 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2601 - - mtr:MTR_7g023250 1155.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2601 1 30439983 30445063 Lja1g2601 1 30439983 30445063 ECH