Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2599 ATGTCTCCAGCAAAGGCGGACACAACTAAAAAGGCTGATGCCAAAGCTCAGGCCTTGAAGACAGCCAAGGCTGTGAAATCAGGTGGCAAGGTGATCAAGAAGAAAGCTAAGAAGATCAGGACAACCGTCACATTTCACAGGCCCAAGACATTGACTAAGGAGAGGAACCCTAAGTATCCTCGCATCAGTGCGACCCCAAGAAACAAGTTGGACCACTATCAGATTCTCAAGTTTCCTTTGACTACTGAATCTGCAATGAAGAAGATTGAGGATAACAACACCCTGGTTTTTATTGTTGACATCCGTGCTGATAAAAAGAAGATTAAGGCTGCTGTGAAGAAAATGTATGACATTCAGGCCAAGAAAGTGAATACTTTGATCAGGCCCGATGGAACAAAGAAAGCATATGTGAGGTTGACTCCAGATTATGATGCCTTGGATGTAGCCAATAAGATTGGTATCATCTAA 468 0.4316 MSPAKADTTKKADAKAQALKTAKAVKSGGKVIKKKAKKIRTTVTFHRPKTLTKERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2599 155 Hamap 50S ribosomal protein L23 [rplW]. 75 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lja1g2599 155 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 72 148 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lja1g2599 155 Pfam Ribosomal protein L23 75 137 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lja1g2599 155 Gene3D - 36 155 IPR012677 -
Lja1g2599 155 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 155 - -
Lja1g2599 155 Pfam Ribosomal protein L23, N-terminal domain 14 64 IPR005633 -
Lja1g2599 155 ProSitePatterns Ribosomal protein L23 signature. 133 148 IPR001014 -
Lja1g2599 155 TIGRFAM uL23_arch: ribosomal protein uL23 79 155 IPR019985 GO:0003735|GO:0005840|GO:0006412
Lja1g2599 155 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2599 Lja-Chr1 30431023 30432825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2599 1 155 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 89.032 5.21e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2599 K02893 - pda:103717303 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2599 1 30431023 30432825 Lja1g2599 1 30431023 30432825 ECH