Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2597 ATGATGTCTAGGGGATTGTTCGGGTGGTCCCCGCCGCATGTGCAACCACTCACGCCGGTTTCGGAGGTTTCCGAGCCGCCGGAGTCTCCTTCGCCGTACCTTGATCCCGGCGCGGAGATCTCCGCGTCGCAGCAGGTGGAGGTTGAGGAGGAGATGGAGGAGCCGGAGGAGATCGAGCCTCCTCCTGCTGCGGTTCCGTTCTCGCAGCTCTTTGCCTGTGCTGATAAGTTTGATTGGTTCCTCATCGCTGTTGGTTCTGTTGCTGCTGCCGCTCACGGCACCGCGCTGGTGGTTTACTTGCATTACTTTGCTAAGATCATCCATGTGCTCCGGGTGGATCATGCCTCGTCGCAGGAGCGGTTTGACAGGTTCACCGAGCTTGCATTGACCATTGTTTATATTGCAGTCGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACTGGAGAGCGGCAGACTGCTGTCATCAGGTCCAACTATGTTCAAGTATTGCTAAATCAAGATATGAGTTTTTTTGATACTTATGGGAATAACGGGGACATTGTGAGTCAAGTATTGAGTGATGTGCTGCTTATCCAGTCTGCCCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATCGGCTTTGTCAATTGTTGGCAGATTGCTTTGATAACATTAGCTACAGGTCCTTTTATTGTTGCTGCCGGAGGAATATCAAATATATTCCTCCATAGGCTCGCCGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTTTCCTATATAAGGACATTGTATGCATTTACAAATGAAACGTTGGCCAAGTACTCGTATGCAACTTCACTACAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACATATGGGCTTGCAATATGTTCTTGTGCTTTACAACTCTGGGTTGGAAGATTCTTGATTATTCATGGAAAAGCGCATGGTGGTGAAATTATTACAGCTCTGTTTGCTGTAATTCTAAGTGGCCTGGGGTTGAATCAAGCAGCCACAAATTTTTACTCATTTGATCAAGGGCGAATAGCTGCTTATAGGCTATTTGAGATGATAAGCCGGTCATCCTCATCTGTTAATCATGATGGCACTGTCCCTGATACTGTGCAAGGAAATATTGAGTTTCGGAATGTTTATTTCAGTTATCTTTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTACCTTCTAAGAAAACTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGCATCATTCCTCTCATGGAGCGTTTTTATGATCCTACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTGGAGTGGCTGAGGAGCCAAATAGGACTAGTTACTCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGATGTCTCCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACATTTATTAGCTCATTACAGAAAGGTTATGACACACAGGTTGGCAGAGCTGGTCTATCTTTGACTGAAGAGCAGAAAATAAAGCTCTCGATTGCAAGAGCTGTGCTTCTAAATCCTTCAGTTCTTCTACTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCAGGAGGCTTTGGATCTGCTCATGTTAGGACGCTCAACAATTATAATTGCTCGAAGGCTTAGTCTCATAAGGAACGCTGATTATATTGCAGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCATGATGAATTGTTGACCTTGGGTGGTCTATATGCAGAGCTTCTTCGATGCGAAGAAGCAGCAAAACTTCCCAAGAGGATGCCTATTCGAAACTACAAGGAGACTGCAGCATTCCAAATTGAGATGGATTCTTCAGCAAGCCATAGCTTCAATGAACCATCATCCCCTAAAATGATGAAGTCACCCTCTCTTCAAAGAGTTTCTAATGTGTCACGGCCTCCAGGTGGCATCTTTAACTCGCAAGAATCACCCAAAGTTCCAAGCCCACCACCTGAGAAGATGCTGGAAAATGGTCAGGCATTGGATGCAGCTGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTGCCGGAGTTACCCAAGATTGATGTACATTCTGTACATCGGCAAAAATCAAATGGTTCTAACCCAGAATCTCCTGTTTCGCCTCTTTTAACATCTGATCCTAAAAATGAACGCTCCCATTCACAGACTTTCAGTAGACCACATAGTCATTCTGATGATGCTTCAGTTACAACGAGAGAGAAAAAGGATGCACAGCATCGGAAGCCACCATCACTTAAAAAGCTGATTGAGCTTAGTTATGCTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCTTATGTTATTGGACTTGTGGTGACAGCTTACTATGAAATTGATAATCAGCATCACTTAGAACGGGAGGTAGACAGGTGGTGCTTGATCATTGCCTGCATGGGCGTTGTAACAGTTATTGCCAACTTTTTGCAGCATTTCTACTTTGGTATTATGGGAGAAAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTCCGAAATGAAGCAGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGCGATTGGCTAATGATGCTACCTTTGTACGAGCTGCTTTTAGCAACCGGCTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGTCTTCTCATTGGTGCTTTGCTGCACTGGCGGTTAGCACTTGTAGCTTTTGCAACCCTTCCAGTTCTCTGTGTTTCTGCAGTTGCTCAGAAATTGTGGCTTGCTGGATTTTCAAGGGGCATCCAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAGGATGCAGTTAGAAACATATACACTGTAGTTGCATTTTGTGCTGGCAATAAGGTAATGGAGCTCTATAGGCTGCAGTTAAAGACAATATTTAAGCAGAGCTTTCTTCATGGGTTGGCAATTGGTTTTGCATTTGGCTTTTCACAATTTCTACTTTTTGCTTGTAATGCCCTTCTGCTTTGGTACACTGCAATATGTGTAAAAAATGGTTATGTAGATCCATCTACAGCGCTCAAGGAGTACATGGTTTTCTCATTTGCAACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAACGAAGAAAGTCTCTCATATCAGTGTTTGATATTATAGACCGTGTACCTAAAATTGATCCTGATGATACCTCAGCATTGAAGCCGCCCAATGTATATGGAAGCATTGAGTTAAAAAATGTTGATTTTTGTTACCCATCTCGTCCAGAAGTGTTGGTATTGAGCAATTTTAGTCTCAAAGTCAATGGGGGCCAAACAGTTGCTATTGTGGGAGTTTCAGGGTCAGGAAAGAGCACTATCATATCTTTGCTTGAGAGATTTTATGATCCCGTAGCCGGCCAAGTTTTTCTGGATGGGAGAGATTTAAAGCTCTATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTGATCCAGCAGGAACCTATTATCTTCTCAACAACCATAAGGGAAAACATTATATATGCAAGGCACAATGCCAGTGAAGCTGAGATGAAAGAGGCTGCAAGAATAGCAAATGCTCATCATTTCATCAGCAGTTTGCCTCATGGTTATGACACTCATGTCGGGATGAGAGGTGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCAAGGGTAGTGCTGAAAAACGCGCCTATCTTGTTGTTGGATGAAGCAAGTTCATCAATTGAATCTGAGTCAAGCAGAGTGATACAAGAGGCTCTAGACACGCTAATAATGGGAAACAAGACCACTATTTTAATAGCGCATAGGGCTGCGATGATGAGGCATGTGGACAATATTGTAGTGCTTAATGGAGGCCGGATAGTGGAGGAAGGGTCTCATGATTCATTGGTGGCAAAGAATGGTCTGTATGTCCAATTGATGCAACCTCATTTTGGTAAGGGTTTGCGGCAGCATCGGCTTGTTTAG 4203 0.4325 MMSRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPGAEISASQQVEVEEEMEEPEEIEPPPAAVPFSQLFACADKFDWFLIAVGSVAAAAHGTALVVYLHYFAKIIHVLRVDHASSQERFDRFTELALTIVYIAVGVFAAGWIEVSCWILTGERQTAVIRSNYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGFVNCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLIIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSVNHDGTVPDTVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPSKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDVSMDQIEEAAKIAHAHTFISSLQKGYDTQVGRAGLSLTEEQKIKLSIARAVLLNPSVLLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLGGLYAELLRCEEAAKLPKRMPIRNYKETAAFQIEMDSSASHSFNEPSSPKMMKSPSLQRVSNVSRPPGGIFNSQESPKVPSPPPEKMLENGQALDAADKEPSIRRQDSFEMRLPELPKIDVHSVHRQKSNGSNPESPVSPLLTSDPKNERSHSQTFSRPHSHSDDASVTTREKKDAQHRKPPSLKKLIELSYAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYEIDNQHHLEREVDRWCLIIACMGVVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEAGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGALLHWRLALVAFATLPVLCVSAVAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKTIFKQSFLHGLAIGFAFGFSQFLLFACNALLLWYTAICVKNGYVDPSTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFDIIDRVPKIDPDDTSALKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAIVGVSGSGKSTIISLLERFYDPVAGQVFLDGRDLKLYNLRWLRSHLGLIQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVIQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVQLMQPHFGKGLRQHRLV* 1401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2597 1400 Coils Coil 250 270 - -
Lja1g2597 1400 Gene3D - 1149 1388 IPR027417 -
Lja1g2597 1400 SUPERFAMILY ABC transporter transmembrane region 810 1136 IPR036640 GO:0005524|GO:0016021
Lja1g2597 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1141 1387 IPR027417 -
Lja1g2597 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 638 IPR027417 -
Lja1g2597 1400 MobiDBLite consensus disorder prediction 780 809 - -
Lja1g2597 1400 Pfam ABC transporter 1169 1317 IPR003439 GO:0005524
Lja1g2597 1400 Gene3D ABC transporter type 1, transmembrane domain 769 992 IPR036640 GO:0005524|GO:0016021
Lja1g2597 1400 Gene3D ABC transporter type 1, transmembrane domain 1003 1148 IPR036640 GO:0005524|GO:0016021
Lja1g2597 1400 MobiDBLite consensus disorder prediction 743 809 - -
Lja1g2597 1400 MobiDBLite consensus disorder prediction 755 779 - -
Lja1g2597 1400 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 19 1397 - -
Lja1g2597 1400 CDD ABC_6TM_Pgp_ABCB1_D2_like 823 1134 - -
Lja1g2597 1400 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 83 371 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g2597 1400 PANTHER ABC TRANSPORTER B FAMILY 19 1397 - -
Lja1g2597 1400 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 828 1120 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g2597 1400 Pfam ABC transporter transmembrane region 86 354 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g2597 1400 Pfam ABC transporter transmembrane region 833 1097 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g2597 1400 CDD ABC_6TM_Pgp_ABCB1_D1_like 82 379 - -
Lja1g2597 1400 Pfam ABC transporter 425 569 IPR003439 GO:0005524
Lja1g2597 1400 Gene3D - 394 641 IPR027417 -
Lja1g2597 1400 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1151 1388 IPR003439 GO:0005524
Lja1g2597 1400 SUPERFAMILY ABC transporter transmembrane region 70 379 IPR036640 GO:0005524|GO:0016021
Lja1g2597 1400 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 404 639 IPR003439 GO:0005524
Lja1g2597 1400 MobiDBLite consensus disorder prediction 666 705 - -
Lja1g2597 1400 MobiDBLite consensus disorder prediction 1 59 - -
Lja1g2597 1400 SMART AAA_5 431 610 IPR003593 -
Lja1g2597 1400 SMART AAA_5 1178 1365 IPR003593 -
Lja1g2597 1400 MobiDBLite consensus disorder prediction 666 729 - -
Lja1g2597 1400 Gene3D ABC transporter type 1, transmembrane domain 69 662 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2597 Lja-Chr1 30402486 30419917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2597 52 696 Calmodulin-binding Proteins AT2G36910 43.625 2.93e-169 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2597 K05658 - gmx:100779000 2512.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2597 1 30402486 30419917 Lja1g2597 1 30402486 30419917 ECH