Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2596 ATGCCAATCTATAGAATTGCAATTGGGTCTCCTGGTGAGGCTGGCCAGCCTGATGCAATTAGAGCAGCATTTGCAGAATTCTTCTCCATGCTTATCTTTGTTTTTGCTGGCCAAGGCTCTGGCATGGCTTACAGCAAAATTACCAACAATGGACCTGCAACACCTGCTGGTCTCATAGCTGCATCACTTTCTCATGCATTTGGGCTTTTTGTGGCTGTTTCTGTTGGGGCAAACATTTCTGGTGGCCATGTGAACCCTGCAGTCACATTTGGGGCTTTCATGGGAGGAAACATAACCCTGTTGAGAAGTATTTTGTATTGGATTGCTCAGTTGCTTGGTTCAGTTGTTGCTTGCATCCTCCTCAAGTCTGCAACTGGTGGAATGGAAACATCAGCTTTTGCTCTATCCTCTGGGGTGTCTGTGTGGAATGCACTAGTTTTTGAAATTGTGATGACATTTGGGTTGGTATACACAGTTTATGCCACAGCAGTGGATCCAAAGAAAGGGAATGTGGGCATTGTTGCTCCAATTGCCATTGGTTTTCTTGTGGGAGCCAATATCTTAGTTGGTGGTGCTTTTGATGGTGCATCAATGAACCCAGCTGTGTCCTTTGGGCCTGCTGTTGTTAGCTGGACCTGGACTCATCACTGGGTCTATTGGGCTGGCCCATTCATGGGAGCAGCACTTGCGGCCATTATTTATGATAATATCTTCATTGGTGATGATGGTCATGAACCCCTCACAAACAGTGATTTCTAG 759 0.4598 MPIYRIAIGSPGEAGQPDAIRAAFAEFFSMLIFVFAGQGSGMAYSKITNNGPATPAGLIAASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFMGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSAFALSSGVSVWNALVFEIVMTFGLVYTVYATAVDPKKGNVGIVAPIAIGFLVGANILVGGAFDGASMNPAVSFGPAVVSWTWTHHWVYWAGPFMGAALAAIIYDNIFIGDDGHEPLTNSDF* 253
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2596 252 SUPERFAMILY Aquaporin-like 17 241 IPR023271 -
Lja1g2596 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2596 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Lja1g2596 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lja1g2596 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2596 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2596 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2596 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2596 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2596 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2596 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Lja1g2596 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2596 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja1g2596 Lja-Chr1 30398742 30400475 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2596 1 252 Major Intrinsic Protein MIP AT4G01470 83.333 5.41e-155 429
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2596 K09873 - gmx:100788583 480.715
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0096 5 901286 902795 Lja1g2596 1 30398742 30400475 ECH
Lja1g2596 1 30398742 30400475 Lja1g2596 1 30398742 30400475 ECH