Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2590 ATGAAGAGAGAAAGAGAAATTGATAGCATGACCATGGCAAATTGCTTGATGCTGCTTTCTCAAGGAGGTGAATTTGAAACCACCACCACCTCCACCTACTCCCCTAGCCGTGTCTTTGAATGCAAAACATGCAACAGGCAATTTTCTTCTTTTCAAGCACTCGGTGGGCATAGGGCAAGTCACAAAAAACCAAGGTTGATGGCAGGAAATGGAGACATGGAATTGCTTCATGGTTCATCATCACCTCCAAAGCCTAAGACTCATGAATGCTCAATTTGTGGGTTGGAGTTTGCAATAGGACAAGCCTTAGGAGGACACATGAGAAGGCACAGAGCTGAAAATTTGAGTGGAAACATGATGCAGAGTTCTACTACTATGAGTTGTAGTAGTGGTGGTAGCAGTCTTGATTCATCACCAAAGAATGTTATGAAAGCTTACAAGAAGATAGTTTTGGCTTTGGATTTGAACTTGACACCTTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGGCCACTGGTTTGGTTGATTATTTGCATTGA 543 0.4162 MKREREIDSMTMANCLMLLSQGGEFETTTTSTYSPSRVFECKTCNRQFSSFQALGGHRASHKKPRLMAGNGDMELLHGSSSPPKPKTHECSICGLEFAIGQALGGHMRRHRAENLSGNMMQSSTTMSCSSGGSSLDSSPKNVMKAYKKIVLALDLNLTPFENDLEFLKIGKATGLVDYLH* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2590 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Lja1g2590 180 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Lja1g2590 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Lja1g2590 180 SMART c2h2final6 39 61 IPR013087 -
Lja1g2590 180 SMART c2h2final6 88 110 IPR013087 -
Lja1g2590 180 PANTHER ZINC FINGER PROTEIN ZAT12 10 166 - -
Lja1g2590 180 Pfam C2H2-type zinc finger 88 113 - -
Lja1g2590 180 Pfam C2H2-type zinc finger 38 64 - -
Lja1g2590 180 Gene3D Classic Zinc Finger 37 110 - -
Lja1g2590 180 PANTHER ZINC FINGER PROTEIN ZAT5 10 166 - -
Lja1g2590 180 SUPERFAMILY beta-beta-alpha zinc fingers 37 110 IPR036236 -
Lja1g2590 180 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2590 Lja-Chr1 30302774 30303633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2590 1 167 C2H2 Transcription Factor Family AT2G37430 44.571 2.73e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g2590 zf-C2H2_6 5.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2590 - - gmx:100781134 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0103 5 937625 938480 Lja1g2590 1 30302774 30303633 ECH
Lja1g2590 1 30302774 30303633 Lja1g2590 1 30302774 30303633 ECH