Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2581 ATGGTGATGGAATGGCAGAAGCAGCAGCAGCAGCAACAGCAGCGTTGGATTCCGAACACGAACGCGAACCTCATGACCGACGAGCAAGTCGAAACGCTGCGCAAGCAAATCGCCGTTTACTCCACCATCTGCGAGCAACTCATTGACATGCACAAAACGCTCTCAACTCACCAAGATCTCGCTGGTGTTAGGCTGGGAGGTATGTACTGTGACCCGTTGATGGCTTCTGGTGGCCATAAAATAAGTTCAAGGCAGCGGTGGACGCCGACAGCGGTGCAGCTGCAGATTCTGGAGCGAATATTTGAAGCTGGGACTGGAACTCCCAGCAAGGAGAAGATCAAGGAGATAACTGCTGATCTCAGCCAGCACGGTCAAATATCTGAAACTAATGTCTATAATTGGTTCCAGAACAGGCGTGCCAGGTCCAAGAGGAAACAGCAGAGCGTGTCGCAGCCGAGTGGTGCTAATGCTGAATCAGAAGTTGAGACTGAGGTTGACTCTAAGGACAAGAAGACTAAATCGGGCGAGGTTGTTGTGCAGCCAACTGCTGAAAACATGTGCTTCCAGAACCCTGATGTGTGCCCTGATTTGCAGTACTTGAGTCCAGAATCAGATGGCGGTCTAAGATCCACCAGAGGATTTGATCATGTTCCTTCTTTTGATGGGATGCTATCAAGCTCAAGGAGTGGCTATCTTACTGAAAAGATGGAAGCACCTGAGAGCTACAACTTATACCAGCCAGCAGGCGGTGACTACGACATGTCAGGTTGA 771 0.5019 MVMEWQKQQQQQQQRWIPNTNANLMTDEQVETLRKQIAVYSTICEQLIDMHKTLSTHQDLAGVRLGGMYCDPLMASGGHKISSRQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRKQQSVSQPSGANAESEVETEVDSKDKKTKSGEVVVQPTAENMCFQNPDVCPDLQYLSPESDGGLRSTRGFDHVPSFDGMLSSSRSGYLTEKMEAPESYNLYQPAGGDYDMSG* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2581 256 MobiDBLite consensus disorder prediction 142 175 - -
Lja1g2581 256 ProSiteProfiles 'Homeobox' domain profile. 80 145 IPR001356 GO:0003677
Lja1g2581 256 MobiDBLite consensus disorder prediction 161 175 - -
Lja1g2581 256 SUPERFAMILY Homeodomain-like 82 149 IPR009057 -
Lja1g2581 256 CDD homeodomain 84 146 IPR001356 GO:0003677
Lja1g2581 256 Pfam Homeodomain 84 144 IPR001356 GO:0003677
Lja1g2581 256 PANTHER - 2 255 - -
Lja1g2581 256 MobiDBLite consensus disorder prediction 146 160 - -
Lja1g2581 256 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 255 IPR044559 GO:0003700
Lja1g2581 256 SMART HOX_1 82 149 IPR001356 GO:0003677
Lja1g2581 256 Gene3D - 85 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2581 Lja-Chr1 30212141 30215475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2581 24 256 Wox Gene Family AT4G35550 51.575 1.90e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lja1g2581 Homeodomain 8.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2581 - - gmx:100784355 349.747