Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2578 ATGCACGCCGGCGTTGACATGTACGACGACGACGGCATTTTCAGAGCATCCTCCTCCGCCTCTCGCCGCCGCCCATACGGTCCCGGCCCGGACCGCCGCGTCGCGTTTCGCCACCTCACCAGAACGACACCGTACTCCGTCCCGCCGCAACCGCAGGTGGAGCGACGAAGGGTGGTGCCTGAGATGGATTTGGAAGACGACAAGGTGTCGGAGAATAAGGGCACAAAGCTCTACATTTCTAACTTGGACTATGGGGTTTCCAATGCAGATATAAAGCTGCTGTTCTCCGAAGAGGGTGAGTTGAAAAGGTACGGCATTCATTATGACAAGAGTGGGAGATCAAAAGGAACAGCAGAAGTAGTCTTCATGAGGCAGTCCGATGCTTTAGCAGCCATCAAGAAATACAACAATATGAGGCTTGATGGAAAGCCACTGCAAATTGAGCTTGTTGGATCAAGTTTGGTTACTCCTGCCCCTGCCGTTGTGCCTCTTTCGCAAAATAGCTTACAGGGAAGGCTAAACCATGCTCTTGTGAGGGAACAAGGAATTGTTGGAGGTAGCAGGTTCAACAATAGCTTTCCGCGTGGCTATCTTCCAAGGGACCATGGAGAAGAGAACCATTTCCGAAAGGTGACATCTTATAGAGATCTTGATCATGACTTGGAGGGGTTTCATCGCCGCCGTCCAAGAGGCCGCACAGGTTTTAAGGGCCATAAGCCAAAGTTGTCCGTTAAAGATCTTGATGAAGACTTGGAGAGGTATCGCTTAGAGGCTAAGAAGGTAAAGAAAGAAAAGGGAGAGTGA 804 0.5075 MHAGVDMYDDDGIFRASSSASRRRPYGPGPDRRVAFRHLTRTTPYSVPPQPQVERRRVVPEMDLEDDKVSENKGTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIKKYNNMRLDGKPLQIELVGSSLVTPAPAVVPLSQNSLQGRLNHALVREQGIVGGSRFNNSFPRGYLPRDHGEENHFRKVTSYRDLDHDLEGFHRRRPRGRTGFKGHKPKLSVKDLDEDLERYRLEAKKVKKEKGE* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2578 267 SMART rrm1_1 76 148 IPR000504 GO:0003723
Lja1g2578 267 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 11 261 - -
Lja1g2578 267 CDD RRM_THOC4 75 149 - -
Lja1g2578 267 Gene3D - 52 241 IPR012677 -
Lja1g2578 267 PANTHER THO COMPLEX SUBUNIT 4A-LIKE ISOFORM X1 11 261 - -
Lja1g2578 267 SUPERFAMILY RNA-binding domain, RBD 40 150 IPR035979 GO:0003676
Lja1g2578 267 Coils Coil 244 267 - -
Lja1g2578 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 145 IPR000504 GO:0003723
Lja1g2578 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2578 Lja-Chr1 30190118 30192533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2578 74 150 Eukaryotic Initiation Factors Gene Family AT2G23350 35.065 5.97e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2578 K12881 - gmx:100785926 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0563 6 13552939 13557580 Lja1g2578 1 30190118 30192533 ECH
Lja1g2578 1 30190118 30192533 Lja1g2578 1 30190118 30192533 ECH