Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2573 ATGGCTGGAAAAGGAGAGGGTGCCACCATCGGAATCGACCTCGGCACCACCTACTCCTGCGTCGGAGTGTGGCAGAACGACGGTGTTGAAATCATCACCAACGACCAGGGCAACCGGACCACCCCCTCTTACGTGGCTTTCACTGATTCTGAACGCTTGATCGGTGATGACGCCAAGAACCAGGTCACCATCAACCCCACCAACACCGTCTTCGATGCAAAGCGTTTGATTGGAAGGAAATTCTCTGATGCTTCTGTTCAGAGTGACATGAAGCTATGGCCATTCAAGGTCATTCATGGTCCTGGCGACAAGCCTATGATTGTTGTTAACTACAAGAACGAGGAGAAACAATTCACTGCTGAGGAGATTTCCTCCATGGTCCTCTTGAAGATGCGTAAGATTGCTGAGGCTTACCTCGGTTCCACCGTGAAGAACGCCGTTGTCACTGTCCCAGCATACTTCAATGACTCTCAGCGCCAGGCCACCAAGGACGCCGGTGTCATCGCCGGCCTTAACGTCATTCGTATCATCAATGAACCCACTGCTGCTGCCCTTGCCTATGGCCTTGACATGGGGCCCACCGGTGATGATGAGAAGAATGTGTTGATTTTTGACCTTGGTGGTGGTACTTTTGATGTCACTCTTCTAATCATTGACTCCAGTGTCTTTGATGTTAAGGCCACTTCCGGAGACACCCATCTTGGAGGTGAAGATTTTGATAACAGGATGGTGAACTATTTTGTTGAGGAGTTCAAGAGAAAGCACAATAAGGACATTAGTGAGGACCCGAGGGCTTTAAGAAGGTTGAGGAATGCATGTGAAAAGGCAAAGAGGACTCTCTCATCCACCGAGCAGACCACAATTGCAATTGACTCATTGTATGAAGGTGTTGACTTGTACACCGCAATCACTCGTGACAGGTTTGAAGAACTCAACATGGACCTCTTCAAGAAGTGCATGGAGACTGTTGAGAAGTGTTTGAGAGACGCTGAGATGGAGAAGAGTGACATACATGATGTTGTTCTTGTTGGTGGGTCTACAAGGATCCCCAAGGTGCAGTCAATGTTGCAGGGTTTCTTCAACGGGAAGGAGCTCTGCAAGAGCATCAACCCTGATGTGGCTGTTGCTTATGGTGCTTCTGTTCAGGCTGCTAAATTGAGTGGTGAGAAGAATAATGAGATTAAGGATCTTGTGTTGTTGGATGTCACTCCCCTTTCACTTGGTGTGGAAACTGTTGGTGGTGTCATGACTGTACTCATTCCAAGGAACTTTACGATTCCGGCCAGGAAAGAGCAGATTTTCTCAACCTACTCAGACAACCAGCCTGGTGTCTTGATCAAGGTGTACGAGGGTGAGAAAACCAGAAGCACGGAAAACAACTTGTTGGGTAAATTCGAGCTTTCTGGCATTCCTCCTGCTCCAAGTGGTGTTCCTAAAATCAATGTTTGCTTTGAAATTGATAGCAATGGTATATTGAATGTCTCTGCTGAGGACAAGACTACAGGGAAGAAGAACAAGATCACTATCACCAATGACAAGGGAAGGTTATCCAAGGAGGAGATTGAGAAGATGGTGCAGGAAGCGGAGAAGTACAATTCTACAAAAGATGCTCCATATCTACGCTTGGAGGCACAAGTAGAACATGATACTTGCCATCAGATTACAGTACCAACCCCAAGTTTACAGTCATTTCCCTCCGGAAACTTTCGATATTATTTCAACTCTACAAAAGAGGCTTCTCAGAAACTTAAAGTGGCACTAAAAGATGATAATTTCTATGTAATTGGATTGCATGGAAAGAGGGGCTCTGGTAAAACAACGTTACTGAAAGATAAGATAGAAGAGTATGAAACGATTTTTCATAAAGTTATATTTCTCCCTGTGTCTGAGAATCAAGACACGAAGAGCATTCAAGAGGAATTTGCAAAGACATTGAACGTGTTTGAAAAACATGACACTGATGCTGTAAGAATCATGAAAATAATTTTGGCATTAGAAAGGAAGGATAGAACTACTCTGGTCATCTTGGATAATTTTCCGTCTAAGTCTAAACTGCAAGAATTAGGTATTCCTTATAATAGCAAACAGTACAAGTTCCTTTTGACTGCACGTGACGAGACAGACTGCATCTTCATGGGATGCGACCATTCAATTTCTCTGGATCCCTTATCTAATGATGAAGCTTTCACACTGCTACGAAAACTTTCTGGTGTTAACTCCCAATCTGCTCTATTTGAAGTGGCACAAGAAGTTGCTTTCAAATGCAATGGTTTACCTGGGTTTATTGAAGAGGTGGCGACTTCCTTGAAAAAGAAGTCCTTAGAGAAGTGGGAAGAATCATTAGTTAGTCTAAGCCACTCAACCGCCCGCTACCAGATTTTTATCAGTTTTAGAGGAGGTGATACTCGACATGTTTTTACAAAGCACCTCCATTATGCTTTGTGCCAGGAGGGGTTCGCGACCTTCAAAGATGATGAGTCATTGGAGGGTGGGGTCCCAATCGAGAAACTTCTGGATGACATTGAAGAATCAAGGTTTGCAATTGTCATTTTATCTGAAAACTATGCAGACTCTGAATGGTGTCTTAAGGAACTCGTCAAGATTCTTGAGTGTAAGGATAAAGAGGGGAAGAACCAGCTAGTTTTGCCAATCTTCTATGAAGTGCCGCCCACAGATGTAAGACATGCACGAAACAGTTATGCTGATGCCATGGCCAAACATGAAAAGAATGGAAAAGATTCATATACACTTAAAACATGGAAAAAGGCTTTGTATGATGTTTGTACGCTGACGGGATATGAAAAGCCTCACGATTGGACCAGAGATCAATTTATTGGAAAGATCGTCAAATTTGCCTGCGATCACAGACATCGCTTGCATATACAAAGCATGTATATGAACTAG 2904 0.4394 MAGKGEGATIGIDLGTTYSCVGVWQNDGVEIITNDQGNRTTPSYVAFTDSERLIGDDAKNQVTINPTNTVFDAKRLIGRKFSDASVQSDMKLWPFKVIHGPGDKPMIVVNYKNEEKQFTAEEISSMVLLKMRKIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVIRIINEPTAAALAYGLDMGPTGDDEKNVLIFDLGGGTFDVTLLIIDSSVFDVKATSGDTHLGGEDFDNRMVNYFVEEFKRKHNKDISEDPRALRRLRNACEKAKRTLSSTEQTTIAIDSLYEGVDLYTAITRDRFEELNMDLFKKCMETVEKCLRDAEMEKSDIHDVVLVGGSTRIPKVQSMLQGFFNGKELCKSINPDVAVAYGASVQAAKLSGEKNNEIKDLVLLDVTPLSLGVETVGGVMTVLIPRNFTIPARKEQIFSTYSDNQPGVLIKVYEGEKTRSTENNLLGKFELSGIPPAPSGVPKINVCFEIDSNGILNVSAEDKTTGKKNKITITNDKGRLSKEEIEKMVQEAEKYNSTKDAPYLRLEAQVEHDTCHQITVPTPSLQSFPSGNFRYYFNSTKEASQKLKVALKDDNFYVIGLHGKRGSGKTTLLKDKIEEYETIFHKVIFLPVSENQDTKSIQEEFAKTLNVFEKHDTDAVRIMKIILALERKDRTTLVILDNFPSKSKLQELGIPYNSKQYKFLLTARDETDCIFMGCDHSISLDPLSNDEAFTLLRKLSGVNSQSALFEVAQEVAFKCNGLPGFIEEVATSLKKKSLEKWEESLVSLSHSTARYQIFISFRGGDTRHVFTKHLHYALCQEGFATFKDDESLEGGVPIEKLLDDIEESRFAIVILSENYADSEWCLKELVKILECKDKEGKNQLVLPIFYEVPPTDVRHARNSYADAMAKHEKNGKDSYTLKTWKKALYDVCTLTGYEKPHDWTRDQFIGKIVKFACDHRHRLHIQSMYMN* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2573 967 Coils Coil 266 286 - -
Lja1g2573 967 Pfam TIR domain 791 937 IPR000157 GO:0007165
Lja1g2573 967 Gene3D - 71 126 - -
Lja1g2573 967 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 393 547 IPR029047 -
Lja1g2573 967 SUPERFAMILY Toll/Interleukin receptor TIR domain 784 932 IPR035897 -
Lja1g2573 967 CDD HSPA1-2_6-8-like_NBD 10 387 - -
Lja1g2573 967 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lja1g2573 967 Gene3D - 793 958 IPR035897 -
Lja1g2573 967 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 544 - -
Lja1g2573 967 SMART till_3 790 930 IPR000157 GO:0007165
Lja1g2573 967 Pfam Hsp70 protein 10 550 IPR013126 GO:0005524|GO:0140662
Lja1g2573 967 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Lja1g2573 967 ProSiteProfiles TIR domain profile. 789 956 IPR000157 GO:0007165
Lja1g2573 967 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 581 784 IPR027417 -
Lja1g2573 967 Gene3D - 566 714 IPR027417 -
Lja1g2573 967 SUPERFAMILY Actin-like ATPase domain 196 388 IPR043129 -
Lja1g2573 967 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 383 555 IPR029047 -
Lja1g2573 967 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Lja1g2573 967 PANTHER HEAT SHOCK PROTEIN 70KDA 1 544 IPR013126 GO:0005524|GO:0140662
Lja1g2573 967 Gene3D - 722 792 IPR042197 -
Lja1g2573 967 Gene3D - 10 382 - -
Lja1g2573 967 Gene3D Actin; Chain A, domain 4 235 318 - -
Lja1g2573 967 PRINTS 70kDa heat shock protein signature 8 21 - -
Lja1g2573 967 PRINTS 70kDa heat shock protein signature 369 389 - -
Lja1g2573 967 PRINTS 70kDa heat shock protein signature 477 493 - -
Lja1g2573 967 PRINTS 70kDa heat shock protein signature 58 66 - -
Lja1g2573 967 PRINTS 70kDa heat shock protein signature 209 219 - -
Lja1g2573 967 PRINTS 70kDa heat shock protein signature 396 415 - -
Lja1g2573 967 PRINTS 70kDa heat shock protein signature 36 48 - -
Lja1g2573 967 PRINTS 70kDa heat shock protein signature 337 353 - -
Lja1g2573 967 PRINTS 70kDa heat shock protein signature 146 166 - -
Lja1g2573 967 Gene3D - 194 366 - -
Lja1g2573 967 SUPERFAMILY Actin-like ATPase domain 9 191 IPR043129 -
Lja1g2573 967 Pfam NB-ARC domain 583 789 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2573 Lja-Chr1 30142394 30147711 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2573 1 545 Calmodulin-binding Proteins AT3G12580 80.367 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2573 K03283 - lja:Lj0g3v0120799.1 951.429