Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2571 ATGGCTGGAGAAGGAGAGGGTCCTGCTATTGGAATTGACCTCGGCACCACCTACTCCTGCGTCGGAGTATGGCAGTATGACAGTGTCAAAATCATCCATAATGACCATGGCAACCGGACCACCCCCTCTTACGTCGGTTTCACTGATTACGAGCTCTTGGTCGGTGATGCTGCCAAGAACCAGGTCACTAGGAACCCCACCAACAGCGTCTTCGATGCTAAGCGTTTGATTGGAAGGAGTTTCTCTGATGATTCAGTTCAGAGTGACATCAAGCTATGGCCATTCGAGGTTATTGCTGGTTCAGCCGACAAGCCTATGATTGTTGTTAGCTACAAGAATGAGGAGAAGAAGTTCACAGCTGAGGAGATTTCCTCCATGGTCCTTAGCAAGATGCGTGAGATTGCTGAGGCTTATCTTGGTTTTGCTGTGAAGAATGCTGTTGTTACTGTCCCGGCGTATTTTAATGACTCCCAGCGCCGGGCCACCAAGGATGCTGGTGTCATTGCAGGCCTCAATGTCATGCGTATACTTAATGAACCTACAGCGGCTGCCATTGCGTATGGCCTTGACAAGAGTGACACCGGTGATGATGAGATCAATGTGTTGATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCTCTTTTAACCATTGAAGATGGTGTCTTTGAAGTTAATTCCACTGCGGGTGACTCGCATCTTGGAGGTGAGGACTTTGATAACAGGATGGTGAACAATTTTGTTGAGGAGTTCAAGAGGAAGCACGAGAAGGACATTAGTGGGAACCCGAGGGCTTTAAGAAGGTTGAGGACCGCATGTGAAAGGGCAAAGAGGACTCTCTCATCCACTGTACAGACCACCATTGAGATTGACTCGTTGTATGAAGGTGTTGACTTATACACTGATATCACTCGTGAAAAGTTTGAAGAGCTCAACATGGACCTCTTCACGAAGTGCATGGAGCCAGTTGACAAGTGTTTGAAGGATGCTAGGATGGACAAGAGCAGTGTCCATGATGTTGTTCTTGTTGGTGGGTCTACTAGGATCCCAAAAGTGCAGCAGCTGTTGCAGGATTTCTTCAACGGGAAGGAGCTCTGCAAGAGCATCAACCCAGATGAGGCTGTTGCTTATGGAGCTGCTATTCAGGCTGCTATCTTGAGTCATGAGAGTCATGAGAAGGTTAAGGATCTTGTGTTGGTGGATGTCATTCCCCTTTCACTTGGTGTGGAAACTGCTGGTGGTGTCATGACTGTCCTGATTCCAAGGAACTGTCCAATCCCATTCAAGAAGGAGCAGGTTTTCTCAACCAACTCAGACAACCAGCCTGGTGTGTTGATCAAGGTGTACGAGGGTGAGAGAACAAGGAGCAGCGACAACAACTTGTTAGGTAAATTTGAGCTTTGTGGCATTCTTCCTGCTCCAAGGGGTGTTCCTCAGATCAATGTTTGCTTTGTCATTGATGAGAATGGTATCCTGAAGGTCTCTGCTGAAGATGAGACTACTGGTGAGAAAAACAATATCACTATTACAAATGACGAGGGGAGACTCTCGAAAGAGGAGATTGAGAAGATGGTGCAGGAGGCGGAGAAGTACAAGGTCGAGGATGAGGAGCACAAGAAGAAGGTCGATGCCAAAAAAGCCTTGGAGAAGATGGTGCAGGAGGGGGAGAAGTACAATTCTTCAAAAGATAGTCCATATCAACACTTGGAGGCACAAGTACAACATGATACTTGCCATGATCAGATTGCATTACCAACTCCTAGTTCAAGTTTACAATCCTTTCCTTCCGGAAACTTTGGGTATTATTTCAACTCCACAAAAGTGGCTTCACAGAAAATTATAAAGGGACTAAAAGATGATAATTGCTATGTACTTGGATTGTATGGAAAGAGAGGCTCTGGTAAAACAGCATTACTGAAAGCTGAGATAGAAGAGTATGAAAAGATTTTTCGTAGAGTGGTATTTCTCACCGTGTCTGAGAATCAAGATATCAAGAGCATTCGAGTGGGAATTGCTAGCTCCTTGAACGTGTTTGAAAAAGATGACAATGATGGTGCGAGAATAATGAAAATAATTTTGGCATTAGAAAGGAAGGATCGAACTACTCTTGTTATCTTGGATAATTTTCCGTCGAAGTCTAAACTGCAAGAATTAGGTGTTCCTTATAATAGTAAACAGTACAAGTTCCTTTTGACTGCACGTAATGAGACAGACTGCATCTTGATGGGATGTGATCATTTGATTCCTCTCGAGCCCTTATCTAATGAGGAAGCTTTTTCCCTGCTACAAAAACTTTCAGGCGTTGACTCCCAGATTGATCTATTTAAAGTGGTACAGGATGTTGCTTTTAAATGCAATGGCTTACCGGGTTTAATTAAAGACGTGGCGTTTTCCTTGAAAAATAAGTCTATTGAGAAGTGGCAAGAATCATTAGTCAGTCTAAGCCACTCAACAGCCCGCTACCAAATTTTTATCAGTTTTAGAGGAAAGGATACTCGGGAGACTTTCACAAATCATCTCTATGATGCTTTATGCAAAGAGGGATTTGAGACCTTCAAAGATAATGAAGCATTGGAGGGTGGAGCCCCAATTGAGAAACTTCTTGAAGCCATTGAAGAATCAAGGTTTGCAATTGTTGTTTTGTCGGAAAACTTTGCAGACTCTAAATGGTGTCTTAAAGAACTAGTCAAGATTCTTGACTGCCGGAAGAGGAAGAAACAATTGGTTTTGCCAATTTTTGTTGAAGTGGAACCAACCGACATAAGGCATCTAAAAGGGAGGTATGGTGAAGCTATGGCTGAACATGAAAAAAAGTTAGCAAAAGATTCTAAGACAGTACTGGAATGGACACTGGCTTTGAGTGATATTTCCCAATTGAAAGGGGAACATTTCTACATTTCTAACTTCAAACGAGAGCATTACGAAAGTATTAAAAGAATGATGTATGGGCTGAAAAATAGGAGCTTGACTAGCTCATTGGAGACTTTTAGTGTTTTTTATTTATTTATTTCATTTAGCCGTGTTCCTATTTTCATGACCTTATTTTTGTATCTTATTTTGGGTACATCTTGTAGTCACTTTTATTATTGGTATATATTGTTGGCCTTTCAATAA 3114 0.4265 MAGEGEGPAIGIDLGTTYSCVGVWQYDSVKIIHNDHGNRTTPSYVGFTDYELLVGDAAKNQVTRNPTNSVFDAKRLIGRSFSDDSVQSDIKLWPFEVIAGSADKPMIVVSYKNEEKKFTAEEISSMVLSKMREIAEAYLGFAVKNAVVTVPAYFNDSQRRATKDAGVIAGLNVMRILNEPTAAAIAYGLDKSDTGDDEINVLIFDLGGGTFDVSLLTIEDGVFEVNSTAGDSHLGGEDFDNRMVNNFVEEFKRKHEKDISGNPRALRRLRTACERAKRTLSSTVQTTIEIDSLYEGVDLYTDITREKFEELNMDLFTKCMEPVDKCLKDARMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAIQAAILSHESHEKVKDLVLVDVIPLSLGVETAGGVMTVLIPRNCPIPFKKEQVFSTNSDNQPGVLIKVYEGERTRSSDNNLLGKFELCGILPAPRGVPQINVCFVIDENGILKVSAEDETTGEKNNITITNDEGRLSKEEIEKMVQEAEKYKVEDEEHKKKVDAKKALEKMVQEGEKYNSSKDSPYQHLEAQVQHDTCHDQIALPTPSSSLQSFPSGNFGYYFNSTKVASQKIIKGLKDDNCYVLGLYGKRGSGKTALLKAEIEEYEKIFRRVVFLTVSENQDIKSIRVGIASSLNVFEKDDNDGARIMKIILALERKDRTTLVILDNFPSKSKLQELGVPYNSKQYKFLLTARNETDCILMGCDHLIPLEPLSNEEAFSLLQKLSGVDSQIDLFKVVQDVAFKCNGLPGLIKDVAFSLKNKSIEKWQESLVSLSHSTARYQIFISFRGKDTRETFTNHLYDALCKEGFETFKDNEALEGGAPIEKLLEAIEESRFAIVVLSENFADSKWCLKELVKILDCRKRKKQLVLPIFVEVEPTDIRHLKGRYGEAMAEHEKKLAKDSKTVLEWTLALSDISQLKGEHFYISNFKREHYESIKRMMYGLKNRSLTSSLETFSVFYLFISFSRVPIFMTLFLYLILGTSCSHFYYWYILLAFQ* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2571 1037 ProSiteProfiles TIR domain profile. 819 981 IPR000157 GO:0007165
Lja1g2571 1037 Pfam NB-ARC domain 611 820 IPR002182 GO:0043531
Lja1g2571 1037 Gene3D - 10 384 - -
Lja1g2571 1037 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lja1g2571 1037 Gene3D - 71 126 - -
Lja1g2571 1037 Gene3D - 752 823 IPR042197 -
Lja1g2571 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 814 IPR027417 -
Lja1g2571 1037 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Lja1g2571 1037 Coils Coil 521 541 - -
Lja1g2571 1037 Gene3D - 601 744 IPR027417 -
Lja1g2571 1037 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Lja1g2571 1037 SMART till_3 820 959 IPR000157 GO:0007165
Lja1g2571 1037 SUPERFAMILY Toll/Interleukin receptor TIR domain 814 959 IPR035897 -
Lja1g2571 1037 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Lja1g2571 1037 PRINTS 70kDa heat shock protein signature 209 219 - -
Lja1g2571 1037 PRINTS 70kDa heat shock protein signature 396 415 - -
Lja1g2571 1037 PRINTS 70kDa heat shock protein signature 36 48 - -
Lja1g2571 1037 PRINTS 70kDa heat shock protein signature 8 21 - -
Lja1g2571 1037 PRINTS 70kDa heat shock protein signature 337 353 - -
Lja1g2571 1037 PRINTS 70kDa heat shock protein signature 369 389 - -
Lja1g2571 1037 PRINTS 70kDa heat shock protein signature 58 66 - -
Lja1g2571 1037 PRINTS 70kDa heat shock protein signature 477 493 - -
Lja1g2571 1037 PRINTS 70kDa heat shock protein signature 146 166 - -
Lja1g2571 1037 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Lja1g2571 1037 SUPERFAMILY Actin-like ATPase domain 196 387 IPR043129 -
Lja1g2571 1037 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 552 - -
Lja1g2571 1037 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Lja1g2571 1037 Gene3D - 824 986 IPR035897 -
Lja1g2571 1037 Gene3D Actin; Chain A, domain 4 235 318 - -
Lja1g2571 1037 PANTHER HEAT SHOCK PROTEIN 70KDA 1 552 IPR013126 GO:0005524|GO:0140662
Lja1g2571 1037 Gene3D - 192 366 - -
Lja1g2571 1037 Pfam Hsp70 protein 9 563 IPR013126 GO:0005524|GO:0140662
Lja1g2571 1037 Pfam TIR domain 821 972 IPR000157 GO:0007165
Lja1g2571 1037 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 564 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2571 Lja-Chr1 30048869 30062077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2571 1 549 Calmodulin-binding Proteins AT3G12580 82.514 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2571 K03283 - lja:Lj0g3v0120799.1 1056.59