Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2569 ATGGCCGGAAAAGGAGAGGGTCCTGCTATTGGAATCGACCTTGGCACCACCTACTCCTGTGTTGGAGTGTGGCAGAACGACCGTGTCGAAATCATCCCCAACGACCAGGGCAACCTGACTACCCCCTCTTACGTCGGTTTCACCGATTGTGAGCGCTTCATCGGTGATGCAGCTAAGTACCAGGTCACCAGGAACCCCATCAACACTGTCTTCAATGCGAAGCGTTTGATTGGAAGGAAATTCTCTGATGCTTCCGTTCAGAGTGACCTGAAGCTATGGCCATTCAAAGTTATTGCTGGTCCTGGCGACAAGCCCATGATTGGTGTCAACTACAAGAACGAGGAGAAGCAGTTCGCTGCTGAGGAGATTTCCTCCATGGTCCTATGGAAGATGCGGAAGATCGCCGATGCTTATCTCTGTTCCACCGTAAAGAATGCCGTTGTCACTGTCCCAACATACTTCAACAACTCCCAGCGCCAGGCCACGAAGGATGCTGGTCTAATTGCGGGCCTTAATGTCATGCATATCATCAATGAACCCACCGCTGCTGCCATTGCCTATGGCCTTGACAAGAAGGCAACCAGTTACGGTGAGAAGAACGTGTTGATTTTTGACCTTGGTGGTGGTACTTTTGATTTAAGGCCACTGCCGCGCGGTGACACCCATCTTGGAGGTGAAGACTTTGATAAAAGAATGGTGTACCATTTTGTTCAGGAGTTCAAGAGGAAGCACAAGACGGACATTAGTGGGAACCCGAGGGCTTTAAGAAGGTTGAGGACCGCATGTGAAAATGCAAAGAGGACTCTCTCATCCACCTCACAGACCACCATTGCGATTGACTCTTTGTATGAAGGTGTTGACTTCTACACCACAATCACGCGTGCCAAGTTTGAGGAGCTCAACATGGACCTCTTCAGGAAGTGCATCGAGCCTGTTGAGAAGTGTTTGAAGGATGCCAAGATGAACAAGAGAAGTGTCCATGATGTTGTTCTTGTTGGTGGCTCTACCAGAATCCCCAAAGTACAGTCATTGTTGCAGGATTTCTTCAGAGGGAAGGAGCTCTGCAAGAGCATCAACCCTGATGAGGCTGTTGCATATGGAGCTGCAGTACAGGCCGCTATCTTGAGCGGTGAGGGTAATGAGATGGTTCAGGGTCTTTTGTTGTTGGATGTTACTCCATTTTCAGTTGGTTTGGAAACTGCCGGTGGTGTCATGACTGTACTCATTCAAAGGAACACCACAATCCCAACCAAGAAGGAGCAGGTTTTCTCAACCTCCTCAGACAACCAGTCTGGTATGATGATCCAGTTATACGAAGGTAAGAGTTCCAGGACCAGAGATAACAACTTGTTGGGTCAATTCGAGTTTTCTGGAATTCCTCCTGCTCCAAAGGGCGTTCCTTGGATCAATTTTTCCTTTGACATTGATGCCAACGGTATCATGAATGTCATTGCTGAGGATATGAGTACTAGGCAGAAGGAGATTGCGAAGATGGTGCAGGATCAACACTTGGAGGCACAATTACAACATGATACCTGTGATCAGAATATAGTACCAACTCCAAGTTTACAGTCCTTCCCTTCCGGAAACTTTGGGTCTTATTTCAACTCTACAAAAAAGGCTTCACAGAAAATTATAGAGGCCCTAAAAGATGATAATTGCTGTGTAATTGGATTATATGGAAAGAGGGGCTCTGGTAAAACAACCTTAGTGCGAGCTGAGATGGAAGAGTATGAAAAGAATTTTCCTTGA 1752 0.4709 MAGKGEGPAIGIDLGTTYSCVGVWQNDRVEIIPNDQGNLTTPSYVGFTDCERFIGDAAKYQVTRNPINTVFNAKRLIGRKFSDASVQSDLKLWPFKVIAGPGDKPMIGVNYKNEEKQFAAEEISSMVLWKMRKIADAYLCSTVKNAVVTVPTYFNNSQRQATKDAGLIAGLNVMHIINEPTAAAIAYGLDKKATSYGEKNVLIFDLGGGTFDLRPLPRGDTHLGGEDFDKRMVYHFVQEFKRKHKTDISGNPRALRRLRTACENAKRTLSSTSQTTIAIDSLYEGVDFYTTITRAKFEELNMDLFRKCIEPVEKCLKDAKMNKRSVHDVVLVGGSTRIPKVQSLLQDFFRGKELCKSINPDEAVAYGAAVQAAILSGEGNEMVQGLLLLDVTPFSVGLETAGGVMTVLIQRNTTIPTKKEQVFSTSSDNQSGMMIQLYEGKSSRTRDNNLLGQFEFSGIPPAPKGVPWINFSFDIDANGIMNVIAEDMSTRQKEIAKMVQDQHLEAQLQHDTCDQNIVPTPSLQSFPSGNFGSYFNSTKKASQKIIEALKDDNCCVIGLYGKRGSGKTTLVRAEMEEYEKNFP* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2569 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 581 IPR027417 -
Lja1g2569 583 Gene3D - 71 126 - -
Lja1g2569 583 Pfam Hsp70 protein 9 506 IPR013126 GO:0005524|GO:0140662
Lja1g2569 583 Gene3D - 192 355 - -
Lja1g2569 583 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lja1g2569 583 PRINTS 70kDa heat shock protein signature 36 48 - -
Lja1g2569 583 PRINTS 70kDa heat shock protein signature 8 21 - -
Lja1g2569 583 PRINTS 70kDa heat shock protein signature 326 342 - -
Lja1g2569 583 PRINTS 70kDa heat shock protein signature 358 378 - -
Lja1g2569 583 PRINTS 70kDa heat shock protein signature 146 166 - -
Lja1g2569 583 PRINTS 70kDa heat shock protein signature 209 219 - -
Lja1g2569 583 PRINTS 70kDa heat shock protein signature 58 66 - -
Lja1g2569 583 PRINTS 70kDa heat shock protein signature 385 404 - -
Lja1g2569 583 PRINTS 70kDa heat shock protein signature 466 482 - -
Lja1g2569 583 CDD HSPA1-2_6-8-like_NBD 9 376 - -
Lja1g2569 583 ProSitePatterns Heat shock hsp70 proteins family signature 3. 329 343 IPR018181 -
Lja1g2569 583 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 373 516 IPR029047 -
Lja1g2569 583 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 502 - -
Lja1g2569 583 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Lja1g2569 583 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 383 501 IPR029047 -
Lja1g2569 583 Gene3D Actin; Chain A, domain 4 224 307 - -
Lja1g2569 583 SUPERFAMILY Actin-like ATPase domain 197 377 IPR043129 -
Lja1g2569 583 Gene3D - 10 372 - -
Lja1g2569 583 PANTHER HEAT SHOCK PROTEIN 70KDA 1 502 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2569 Lja-Chr1 30016445 30018798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2569 1 501 Calmodulin-binding Proteins AT3G12580 78.178 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2569 K03283 - twl:119981104 823.157