Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2553 ATGACAGAAAAATATGCAGCATGCGCCATAGGAATTGACCTTGGTACCACTTATTCATGCGTTGGAGTGTGGCAGGAGCAACAAGATAGAGTGGAGATTATCCACAATGACCAAGGCAACAATACCACACCTTCTTTTGTTGCCTTCACAGATAAACAAAGGTTGATTGGGGAAGCTGCTAAAAATCAAGCTGCTACCAATCCAGACAACACTGTTTTTGATGCTAAGAGGTTAATTGGAAGGAAATTTAGTGACCCCATTATTCAAAAAGATATTTTATTGTGGCCCTTCAAAGTCATTGGCGATGTTAATGACAAACCCATGATTGTCGTTAGCTACAAAGGCCAAGAGAAGGAACTTTCAGCGGAGGAAATTTCATCTATGGTTCTCATAAAGATGAAGGAGATTGCAGAGGCATTTTTGGAGGCACCTGTGAAGAATGCAGTTGTCACTGTTCCTGCTTATTTTAATGACTCGCAGAGAAAAGCCACCAAGGATGCCGGTGCCATTGCTGGCCTCAATGTTATTCGTATAATCAATGAACCAACTGCTGCAGCTATTGCATATGGCCTTGAAAACAGAACACGTTGTGTTGGAGAAAGAAATGTTTTTGTGTTTGACCTTGGTGGGGGTACTTTTGATGCCACTTCTGGAAACACTCACCTTGGGGGAGAGGACTTTGATAATAGAATGGTAGAATATTTGGCAAGGGAGTTCAAGAAGAAGCACAAAATGGACATCAAGGGGAATGCAAAAGCTCTGAGGAAGTTGAGAAAAGCATGTGAGAGGGCGAAAAGGACACTCAGTTTTGCTGTTGATACCACCATTGAGGTAGACGCTTTATTCGAGGGAATAGACTTTAGTTTTCCAATCTCTCGTGGGAGGTTTGAGAAGATCAACATGGATCTATTTGAGGAGTGTATGGAGACTGTGGAGAGGTGTCTTACTGATGCTAAGATGAAGAAGAGTAGTGTGGATGATGTCGTTCTTATTGGTGGTTCTTCTAGGATTCCCAAAGTGCAGCAGCTATTACAAGATTTCTTCAATGGGATGGAATTGTGTAGGAGCATTAACCCTGATGAGGCTGTTGCATGTGGTGCAGCCGTCCAGGCTGCTTTGTTGAGCGAGGGCGTTAAGAATGTTCCAAAGATAGCTCTTTCGGATGTTACACCTCTTTCACTAGGTATTGCAGAAGAAGGAGATCTCATGAGTGTTGTGATTCCTAGGAACACTACCATTCCTGTGAAGAAAACAGAAGAATACGTTACAATTTATGATGACCAATCCAGCCTTTTAGTCGAGGTTTATGAGGGTGAGAGATCAAGAGCCAGTTATAACAATTTGTTGGGTTATTTTTATCTTACTGGCATTACTCCCGCTCCTCGTGGTCATCCTCATGATGTATGCTTCGCTATTGATGAAAATGGTATCCTCACTGTTTCTGCTAAGGAAAAAACTAATGGCAATATGAATGAGATTACCATAACCAATGACACAGGAAGACTGTCACCCGAAAAAATCAGAAGATTGATTGAAGAAGCTGAGAATTACAAGGCAGAAGATATGAAGTTCAAAAAGAAGGTTAAAGTAATGAAGGACATGGAGGATTACCTTTATGATATGAAAAAGCTTGTTACGGATAAGGGTGTCAGTTCTAAGCTTTCTACAGTGGACCAAGTTAAGATCAATTCAGCTATTGTAAAGGGAAAAATATTGCTTGGTGGTGACCAGCAGGAAGATACGTTTGTATTTGTGAACATGTTAAGAGAGCTTAAGAGCATATTTGAACCTGCAATGGCCAAGATTAATAATAGTTGGACTAATGAGGAAAGTGATAATGATTGA 1845 0.4092 MTEKYAACAIGIDLGTTYSCVGVWQEQQDRVEIIHNDQGNNTTPSFVAFTDKQRLIGEAAKNQAATNPDNTVFDAKRLIGRKFSDPIIQKDILLWPFKVIGDVNDKPMIVVSYKGQEKELSAEEISSMVLIKMKEIAEAFLEAPVKNAVVTVPAYFNDSQRKATKDAGAIAGLNVIRIINEPTAAAIAYGLENRTRCVGERNVFVFDLGGGTFDATSGNTHLGGEDFDNRMVEYLAREFKKKHKMDIKGNAKALRKLRKACERAKRTLSFAVDTTIEVDALFEGIDFSFPISRGRFEKINMDLFEECMETVERCLTDAKMKKSSVDDVVLIGGSSRIPKVQQLLQDFFNGMELCRSINPDEAVACGAAVQAALLSEGVKNVPKIALSDVTPLSLGIAEEGDLMSVVIPRNTTIPVKKTEEYVTIYDDQSSLLVEVYEGERSRASYNNLLGYFYLTGITPAPRGHPHDVCFAIDENGILTVSAKEKTNGNMNEITITNDTGRLSPEKIRRLIEEAENYKAEDMKFKKKVKVMKDMEDYLYDMKKLVTDKGVSSKLSTVDQVKINSAIVKGKILLGGDQQEDTFVFVNMLRELKSIFEPAMAKINNSWTNEESDND* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2553 614 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 502 601 IPR029048 -
Lja1g2553 614 Gene3D - 194 354 - -
Lja1g2553 614 Gene3D Actin; Chain A, domain 4 223 306 - -
Lja1g2553 614 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lja1g2553 614 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 379 531 IPR029047 -
Lja1g2553 614 ProSitePatterns Heat shock hsp70 proteins family signature 3. 328 342 IPR018181 -
Lja1g2553 614 PANTHER HEAT SHOCK PROTEIN 70KDA 6 603 IPR013126 GO:0005524|GO:0140662
Lja1g2553 614 SUPERFAMILY Actin-like ATPase domain 200 375 IPR043129 -
Lja1g2553 614 SUPERFAMILY Actin-like ATPase domain 9 192 IPR043129 -
Lja1g2553 614 Pfam Hsp70 protein 9 596 IPR013126 GO:0005524|GO:0140662
Lja1g2553 614 PANTHER HEAT SHOCK 70 KDA PROTEIN 6 603 - -
Lja1g2553 614 Gene3D - 532 605 IPR029048 -
Lja1g2553 614 Gene3D - 10 372 - -
Lja1g2553 614 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 380 529 IPR029047 -
Lja1g2553 614 Gene3D - 73 128 - -
Lja1g2553 614 PRINTS 70kDa heat shock protein signature 8 21 - -
Lja1g2553 614 PRINTS 70kDa heat shock protein signature 463 479 - -
Lja1g2553 614 PRINTS 70kDa heat shock protein signature 357 377 - -
Lja1g2553 614 PRINTS 70kDa heat shock protein signature 383 402 - -
Lja1g2553 614 PRINTS 70kDa heat shock protein signature 211 221 - -
Lja1g2553 614 PRINTS 70kDa heat shock protein signature 38 50 - -
Lja1g2553 614 PRINTS 70kDa heat shock protein signature 325 341 - -
Lja1g2553 614 PRINTS 70kDa heat shock protein signature 148 168 - -
Lja1g2553 614 PRINTS 70kDa heat shock protein signature 60 68 - -
Lja1g2553 614 Coils Coil 507 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2553 Lja-Chr1 29792852 29794820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2553 1 602 Calmodulin-binding Proteins AT3G12580 63.754 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2553 K03283 - gmx:102667572 835.099