Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2552 ATGGCAAAAAAATATGAGGGTCCTGCAATAGGAATTGATTTAGGCACTACCTATTCATGTGTTGCTATATGGCAAGGACAGAACAATCGAGCTGAGATCATTCATAATGAACAAGGAAATAGGACTACCCCTTCTTTTGTTGCTTTCACTGATACACAAAGATTGATTGGTGATGCTGCCAAAAATCAAGCTGCATCAAATCCTTCAAACACTGTCTTTGATGCAAAGAGATTGATTGGAAGGAAATATAGCGATTCAGTTATTCAAGATGATGTTAAGCTGTGGCCCTTTGAGGTTATTGCTGGAACTGATGACAAACCCACCATTGTCGTTAACTACAAGGGTGAGGAAAAACACCTTGCTCCTGAGGAAATCTCATCCATGGTTCTTACAAAGATGAAGGAGATTGCTGAGGCATTCTTGGGGTCTACAGTGAAGAATGCAGTTATCACTGTGCCAGCTTACTTCAATGATTCTCAGCGAAAAGCCACTAAAGACGCAGGTGTCATTGCTGGCCTCAATGTCATGCGGATAATCAATGAACCGACGGCTGCAGGTCTCGCATATGGCCTTCAGAAGAAATCTAGTTTTGATGGTAAGTGCAATGTGTTCATCTTTGATCTTGGTGGCGGCACTTTCGATGCCACTGCTGGTGATACACACCTCGGAGGAGAGGACTTTGATAACAGAATGGTTAACCATTTTGTTAATGAGTTTAAGAGGAAGCACAAGAAGGACATTAGTGGGAACCCCAGAGCCTTAAGAAGATTGAGAAGTGCTTGTGAGAGGGCGAAAAGGACACTCTCATTTGCGGTTGACACAAATATTGAAGTTGATGCTTTATATGAGAGCACTGACTTCTGTTCGACAATTACACGTGCCAGATTTGACGAGCTCAACGCGGATCTATTTACAAAGTGTATGGTGACAGTTGAGAGGTGTCTTAATGATTCTAAGATGGACAAGAGTGACATAGATGATGTTGTTCTTGTCGGTGGCTCTTCTAGGATTCCCAAAGTTCAGGAACTATTGCAGGATTTTTTTGAAGGTAAGGAACTGTGCAAGGGGATCAATCCTGATGAAGCTGTTGCTTATGGTGCAGCTGTGCAAGCTGCATTGTTGACCGAAGGAACTAACAATGTTCCAAACTTGGTGTTGATGGATGTTACTCCTTTGTCTCTTGGTATATCAATAAAAGGAGATCTCATGAGTGTAATGATCCCTAGAAACTCTACCATTCCAACAAAGAAGGAACATGTATACTTCACAGGTTATGATAACCAACTATCTGCTGCAATCAATGTTTATGAGGGTGAGAGAACAAGAGCCAGTGAAAACAACTTGCTGGGTTTGTTTAGTCTTGCAGTTCCCCCGGCTCCTCGACTACTTCCGATCAAAGTATGCTTTTCTACAGATGAAGATGGTATTTTAAATGTGTCTGCGGAGGAAGAAACAACTGGGAATAAGAGAGATATTACAATTACAAATGAAGATGGAAGACTTTCAAGTGAAGAAATTCAGAGAATGATTCTGGAAGCTGAGAATTTCAAGGTTGAGGATATGGAGTTCCAGAAGAAGGCGAAAGCAATGAATACTCTGGATGATTACCTTTTCAATATGATCAAACTTATGCAGGATAAGAGTGTCAGTTCTAAGCTTCCCCCAATGGAGCAAGTTAAGATCAATTCAGCTATTGTGAAGGGCCAAAATTTGCTTGATGATGCCCAGCTTGAGGAGACAATTGTATTTGTTGAGTTTTTAAGGGAGCTTAAGAGCATTTTTGAACCTGCTATGGATAGGATTGGAAGAAAATTGGGTTGA 1821 0.4119 MAKKYEGPAIGIDLGTTYSCVAIWQGQNNRAEIIHNEQGNRTTPSFVAFTDTQRLIGDAAKNQAASNPSNTVFDAKRLIGRKYSDSVIQDDVKLWPFEVIAGTDDKPTIVVNYKGEEKHLAPEEISSMVLTKMKEIAEAFLGSTVKNAVITVPAYFNDSQRKATKDAGVIAGLNVMRIINEPTAAGLAYGLQKKSSFDGKCNVFIFDLGGGTFDATAGDTHLGGEDFDNRMVNHFVNEFKRKHKKDISGNPRALRRLRSACERAKRTLSFAVDTNIEVDALYESTDFCSTITRARFDELNADLFTKCMVTVERCLNDSKMDKSDIDDVVLVGGSSRIPKVQELLQDFFEGKELCKGINPDEAVAYGAAVQAALLTEGTNNVPNLVLMDVTPLSLGISIKGDLMSVMIPRNSTIPTKKEHVYFTGYDNQLSAAINVYEGERTRASENNLLGLFSLAVPPAPRLLPIKVCFSTDEDGILNVSAEEETTGNKRDITITNEDGRLSSEEIQRMILEAENFKVEDMEFQKKAKAMNTLDDYLFNMIKLMQDKSVSSKLPPMEQVKINSAIVKGQNLLDDAQLEETIVFVEFLRELKSIFEPAMDRIGRKLG* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2552 606 Gene3D Actin; Chain A, domain 4 223 306 - -
Lja1g2552 606 SUPERFAMILY Actin-like ATPase domain 199 374 IPR043129 -
Lja1g2552 606 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lja1g2552 606 Gene3D - 73 128 - -
Lja1g2552 606 Gene3D - 530 602 IPR029048 -
Lja1g2552 606 Gene3D - 194 354 - -
Lja1g2552 606 Pfam Hsp70 protein 9 582 IPR013126 GO:0005524|GO:0140662
Lja1g2552 606 ProSitePatterns Heat shock hsp70 proteins family signature 3. 328 342 IPR018181 -
Lja1g2552 606 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 378 529 IPR029047 -
Lja1g2552 606 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Lja1g2552 606 PRINTS 70kDa heat shock protein signature 211 221 - -
Lja1g2552 606 PRINTS 70kDa heat shock protein signature 325 341 - -
Lja1g2552 606 PRINTS 70kDa heat shock protein signature 357 377 - -
Lja1g2552 606 PRINTS 70kDa heat shock protein signature 60 68 - -
Lja1g2552 606 PRINTS 70kDa heat shock protein signature 148 168 - -
Lja1g2552 606 PRINTS 70kDa heat shock protein signature 383 402 - -
Lja1g2552 606 PRINTS 70kDa heat shock protein signature 8 21 - -
Lja1g2552 606 PRINTS 70kDa heat shock protein signature 38 50 - -
Lja1g2552 606 PRINTS 70kDa heat shock protein signature 462 478 - -
Lja1g2552 606 Gene3D - 10 372 - -
Lja1g2552 606 PANTHER HEAT SHOCK PROTEIN 70KDA 4 600 IPR013126 GO:0005524|GO:0140662
Lja1g2552 606 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 600 - -
Lja1g2552 606 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 380 534 IPR029047 -
Lja1g2552 606 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 529 601 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2552 Lja-Chr1 29789377 29791327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2552 1 606 Calmodulin-binding Proteins AT3G12580 65.329 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2552 K03283 - gmx:102667578 804.283