Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2551 ATGGCCAAAAAATATGAGGGACCTGCAATAGGAATTGATTTAGGCACCACCTATTCATGTGTTGCTGTTTGGCAGGAACAGAACAATAGAGCTGAGATCATTTTCAACGAACAAGGAAATAAAACTACTCCTTCCTTTGTTGCTTTCACTGATACTCAAAGATTGATTGGTGATGCTGCCAAAAATCAAGCTGCAGCAAACCCATCAAATACTATCTTTGATGCAAAGAGGTTAATTGGTAGGAAATACAACGATCCCATTATTCAGGATGATATTAAGCTGTGGCCCTTTAAGGTCATTGCTGGAACTGATGAAAAACCCTCTATTGTTGTTAACTACAAGGGTGAGGAGAAGCGCCTTGTCCCTGAGGAAGTCTCATCCATGGTTCTGTCAAAGATGAAGGAGATTGCTGAGGCCTTTTTGGGGTCACCAGTGAAAAATGCAGTTATCACTGTGCCGGCTTATTTCAATGATTCTCAGCGAAAAGCCACCAAAGATGCTGGTGCTATTGCTGGCCTCAATGTTATGCGGATAATCAATGAACCAACTGCTGCAGGTCTTGCTTATGGCCTTCAGAAGAAATCTAGTTTTAATGAAAAGCGAAATGTGTTCATCTTTGATCTCGGTGGCGGCACATTTGATGCCACTGCTGGTGATACTCACCTTGGAGGAGAGGACTTTGACAACAGAATGGTGGATCATTTTGTTAAGGAGTTTAAGAGAAAGTACAAGAAGGATATTAGTGAGGACCCAAGAGCCCTGAGGAGGTTGAGAACTGCCTGTGAGAGGGCAAAAAGGACACTCTCATTTTCTGTAGATACCACAATTGAGGTTGATGCTTTATTTGTGAATACTGACTTCTCTTCAACAATTACTCGCGCCAGGTTTGAGGAACTCAACATGGATCTATTTATAAAGTGTATGGAGACAGTTGAGAGGTGTCTTAATGATTCTAAGATAGACAAGAGTGATATTGATGATGTTGTCCTTGTTGGTGGTTCTTCTAGGATTCCCAAAGTTATGGAGTTATTGGAGGAATTTTTCAAGGGTAAGGATCTGTGCAAGAGCATCAACCCCGATGAGGCTGTAGCTTATGGTGCAGCTGTCCAAGCTGCTTTGTTGACTGAAGGTGTTAATAATGTTCCAAACTTGGTGTTGATGGATGTGACACCACTGTCTCTTGGTATAAACACAAAAGGAGATCTCATGAGTGTAGTGATTCCTAAGAATTCTACAATTCCTGTTAAGAACACACAAGTATACTCTACAATTGAGGATAACCAATTATCAGCCTTGATTGAGGTTTATGAGGGCGAGAGGACTATAGCAACTGAAAACAACTTGCTGGGTTTGTTTAATCTTTCAGTTCCTCCTGCTCTGCGAGGCCTTCCTATCAAGGTAAGCTTTGCTATAGATTTTGATGGTATATTAAATGTCTCTGCAGAGGAAGAAACCACTGGTAATAAAAAAGAGATTAGTATAACAAATGAAGATGGAAGGCTTTCAACTGAAGAAATTGAGAGAATGATTCAAGAAGCTGAGAGTTTCAAGGCTGAAGATATGAAGTTCCAGAAGAAGGTGAAAGCAGTGAATGCTGTTGATGATTATGTTTACAATATGAAAAGAGTAATGAAGGATAAGTCTGTTAGTTCTAAGCTTTCCCCGATGGACCAAGTCAAGATCAATTCAGCAATTTTAAAGGGGGAAAATTTGCTTGATGGTGAACAGCAGCAAGATGCGTTTGTGTTTGTGGACTTGTTAAGGGAGCTTAAGAACATGTTTCAACCTGCTATGGCCAAGATCAACAAGGGTCTGACTGATGAGGATAGTGATGAGGATTATTATTAA 1848 0.4048 MAKKYEGPAIGIDLGTTYSCVAVWQEQNNRAEIIFNEQGNKTTPSFVAFTDTQRLIGDAAKNQAAANPSNTIFDAKRLIGRKYNDPIIQDDIKLWPFKVIAGTDEKPSIVVNYKGEEKRLVPEEVSSMVLSKMKEIAEAFLGSPVKNAVITVPAYFNDSQRKATKDAGAIAGLNVMRIINEPTAAGLAYGLQKKSSFNEKRNVFIFDLGGGTFDATAGDTHLGGEDFDNRMVDHFVKEFKRKYKKDISEDPRALRRLRTACERAKRTLSFSVDTTIEVDALFVNTDFSSTITRARFEELNMDLFIKCMETVERCLNDSKIDKSDIDDVVLVGGSSRIPKVMELLEEFFKGKDLCKSINPDEAVAYGAAVQAALLTEGVNNVPNLVLMDVTPLSLGINTKGDLMSVVIPKNSTIPVKNTQVYSTIEDNQLSALIEVYEGERTIATENNLLGLFNLSVPPALRGLPIKVSFAIDFDGILNVSAEEETTGNKKEISITNEDGRLSTEEIERMIQEAESFKAEDMKFQKKVKAVNAVDDYVYNMKRVMKDKSVSSKLSPMDQVKINSAILKGENLLDGEQQQDAFVFVDLLRELKNMFQPAMAKINKGLTDEDSDEDYY* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2551 615 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lja1g2551 615 Gene3D - 10 370 - -
Lja1g2551 615 ProSitePatterns Heat shock hsp70 proteins family signature 3. 328 342 IPR018181 -
Lja1g2551 615 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 380 534 IPR029047 -
Lja1g2551 615 Pfam Hsp70 protein 9 600 IPR013126 GO:0005524|GO:0140662
Lja1g2551 615 Gene3D - 501 604 IPR029048 -
Lja1g2551 615 PRINTS 70kDa heat shock protein signature 8 21 - -
Lja1g2551 615 PRINTS 70kDa heat shock protein signature 357 377 - -
Lja1g2551 615 PRINTS 70kDa heat shock protein signature 148 168 - -
Lja1g2551 615 PRINTS 70kDa heat shock protein signature 211 221 - -
Lja1g2551 615 PRINTS 70kDa heat shock protein signature 325 341 - -
Lja1g2551 615 PRINTS 70kDa heat shock protein signature 383 402 - -
Lja1g2551 615 PRINTS 70kDa heat shock protein signature 462 478 - -
Lja1g2551 615 PRINTS 70kDa heat shock protein signature 38 50 - -
Lja1g2551 615 PRINTS 70kDa heat shock protein signature 60 68 - -
Lja1g2551 615 Gene3D Actin; Chain A, domain 4 224 306 - -
Lja1g2551 615 Gene3D - 194 354 - -
Lja1g2551 615 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Lja1g2551 615 Gene3D - 73 128 - -
Lja1g2551 615 PANTHER HEAT SHOCK PROTEIN 70KDA 4 602 IPR013126 GO:0005524|GO:0140662
Lja1g2551 615 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 602 - -
Lja1g2551 615 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 529 603 IPR029048 -
Lja1g2551 615 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 371 499 IPR029047 -
Lja1g2551 615 SUPERFAMILY Actin-like ATPase domain 198 374 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2551 Lja-Chr1 29781856 29783865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2551 1 604 Calmodulin-binding Proteins AT3G12580 65.862 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2551 K03283 - gmx:102667578 802.357