Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2550 ATGAAGAGAAGATATGAAGGATTCGCCGTGGGAATCGATCTGGGCACGACGTATTCATGCGTCGGAGTGTGGCAGGATCAACACAGGAGAGTGGAGATTATCCACAACGATCAAGGCAACAAGACAACACCTTCTTTTGTTGCTTTCACTGAAAATCAAAGGTTGATTGGTGATACTGCTCTAAATCAGGCTTCTGCTAACCCAGACAACACTGTTTTTGATGCAAAGAGATTAATTGGTAGGAAATTCAGTGATCCTGTGGTTCAAAATGATGTGATGTTGTGGCCATTCAAGGTCATTGCTGGTGTTAACGACAACCCTATGATTGTTGTTAAGTACAAAGGTCAGGAGAAGAAGCTTTCAGCTGAGGAAATCTCATCTATGGTCCTCACAAAGATGCGGGAGAGTGCAGAGGCATATTTGGAAGCCCCTGTGAAGAATGCTGTTATTACTGTGCCTGCTTACTTCAATGATGCCCAGAGAAAAGCCACCATAGATGCCGGTACCATTGCTGGCCTCAATGTTATGCGGATAATCAATGAACCCACTGCTGCAGCTCTTGCATATGGCCTTGACAAGAGAATCGACTGTGTTGGAGAACGGAATATTTTTGTATTTGATCTTGGTGGAGGTACTTTTGATGTGTCTCTCCTTACAATTAAGGATAAGGTCTTCAGAGTTAGGGCCACGGCTGGAAACACTCACCTTGGGGGAGCGGACTTTGACAACAGAATGGTGGACTACTTTGTAGAAGAGTTTAAAAGAAAGAACAAAGTTGACATTAGAGGGAACTCAAGAGCACTAAGGAGGTTGAGAAATGCGTGTGAGAAGGCGAAAAGGACACTCTCTTATGCTGTTGTCACAACAATGGAGATAGATGGCTTGTTTCAGGGCATTGACTTCCATTCGTCGATTACTCGTGCCAAGTTTGAGGAGATCAATATGAATCTTTTTGAAGAGTGTATAAAGACTGTTGACAGGTGTCTTAATGATGCTAAGATGGACAAGAGTAGTGTGGATGATGCTGTCCTTGTTGGTGGTTCTTCTAGGATTCCCAAAGTGCAGCAGTTATTGCAGGACTTCTTCAAAGGAAAGGAACTGTGCAAGAGCATTAACCCTGATGAGGCTGTTGCTTATGGTGCAGCGGTCCAGGCTGCATTGTTGAGCGAGGGCATTAAGAATGTTCCAAACTTGGTCCTATTAGACGTTACCCCGCTGTCCTTAGGTTGGGGGCTAATAAGAGATCGCATGAGTGTAGTGATTCCTAAGAATACTGCTATTCCGGTGAAGGAGACAAAAGAATACGTTACAGTTAAAGATAACCAACCCGGTCTCTTGATTAAGGTTTATGAGGGTGAGAGAACAAGAGCCAGTGATAACCATTGTCTGGGTTGTTTTACTCTTTCTGGCCTGCCTTCTGTTCCTCGCGGCCATCCTTACAATGTATGCTTTGCTATCGATGAAAATGGCATCCTAACTGTTTCTGCGGAGGAAAAAACCACTGGAAATAAGAGCAAGATTACCATAACTAATGACAAAGGAAGACTGTCATCCAAAGCAATTCAGAGAATGATTGAAGAGGCTGCAATATACAATGATGATGATAAGAAGTTCCTCAGGAAGGCCAATGCAATGAATGCTTTGGATGATTACGTTTACAAGATTAGGAATGCATTACAAAAGGAAGGTATCAATCCAAAGCTTTGCTTACAAGAAAATGAGAAGATCAATTCTGCTATTACCAAGGCCACGAATTTGCTTGGTGATAGTAACCAACAGGGTGAACTAGATGTGATTGAGGATTATGTGAAGGAGCTTGAGAGCATCTTTGAAGACATTATGGGCAAGATTGGCTAG 1857 0.4297 MKRRYEGFAVGIDLGTTYSCVGVWQDQHRRVEIIHNDQGNKTTPSFVAFTENQRLIGDTALNQASANPDNTVFDAKRLIGRKFSDPVVQNDVMLWPFKVIAGVNDNPMIVVKYKGQEKKLSAEEISSMVLTKMRESAEAYLEAPVKNAVITVPAYFNDAQRKATIDAGTIAGLNVMRIINEPTAAALAYGLDKRIDCVGERNIFVFDLGGGTFDVSLLTIKDKVFRVRATAGNTHLGGADFDNRMVDYFVEEFKRKNKVDIRGNSRALRRLRNACEKAKRTLSYAVVTTMEIDGLFQGIDFHSSITRAKFEEINMNLFEECIKTVDRCLNDAKMDKSSVDDAVLVGGSSRIPKVQQLLQDFFKGKELCKSINPDEAVAYGAAVQAALLSEGIKNVPNLVLLDVTPLSLGWGLIRDRMSVVIPKNTAIPVKETKEYVTVKDNQPGLLIKVYEGERTRASDNHCLGCFTLSGLPSVPRGHPYNVCFAIDENGILTVSAEEKTTGNKSKITITNDKGRLSSKAIQRMIEEAAIYNDDDKKFLRKANAMNALDDYVYKIRNALQKEGINPKLCLQENEKINSAITKATNLLGDSNQQGELDVIEDYVKELESIFEDIMGKIG* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2550 618 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Lja1g2550 618 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lja1g2550 618 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 545 IPR029047 -
Lja1g2550 618 PRINTS 70kDa heat shock protein signature 60 68 - -
Lja1g2550 618 PRINTS 70kDa heat shock protein signature 148 168 - -
Lja1g2550 618 PRINTS 70kDa heat shock protein signature 211 221 - -
Lja1g2550 618 PRINTS 70kDa heat shock protein signature 397 416 - -
Lja1g2550 618 PRINTS 70kDa heat shock protein signature 339 355 - -
Lja1g2550 618 PRINTS 70kDa heat shock protein signature 371 391 - -
Lja1g2550 618 PRINTS 70kDa heat shock protein signature 477 493 - -
Lja1g2550 618 PRINTS 70kDa heat shock protein signature 8 21 - -
Lja1g2550 618 PRINTS 70kDa heat shock protein signature 38 50 - -
Lja1g2550 618 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 616 - -
Lja1g2550 618 PANTHER HEAT SHOCK PROTEIN 70KDA 4 616 IPR013126 GO:0005524|GO:0140662
Lja1g2550 618 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Lja1g2550 618 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 549 IPR029047 -
Lja1g2550 618 Gene3D - 194 368 - -
Lja1g2550 618 Gene3D - 546 618 IPR029048 -
Lja1g2550 618 SUPERFAMILY Actin-like ATPase domain 200 388 IPR043129 -
Lja1g2550 618 Gene3D - 73 128 - -
Lja1g2550 618 Gene3D Actin; Chain A, domain 4 237 320 - -
Lja1g2550 618 Pfam Hsp70 protein 9 616 IPR013126 GO:0005524|GO:0140662
Lja1g2550 618 Gene3D - 10 386 - -
Lja1g2550 618 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 617 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2550 Lja-Chr1 29778238 29780770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2550 1 617 Calmodulin-binding Proteins AT3G12580 65.751 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2550 K03283 - gmx:102667572 931.784