Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2538 ATGGCGGCCGCATCCACAACTCGTGAAAAGTACCTGTACATGGCAAAGCTCGCCGAGGAGGCTGAGGCCTACGATGAGATGGTGGAGTTCATGGAGAAGGTCTACGCAGCTGCAGACAATGAGGACGAGGAACTCACGGTGGAGGAGAGGAACCACTTCTCGGTGGCCTACAAAAACGTGATGAACACAAAGCGCGCTTCGTGGCGCGTCATCGCCTCCAAGGAGGGGAAGGAGGAGAGCCTTGGTAACGAGGACCACCTAGACAACATCCGCGAATTTCGTTACATGGTAGAGTCCCATCTCTGTAACATCTGCGACGATGTCCTCAATCTCCTCGACTCACGCCTCATCCCATCGGCCTCCTCCGCCGAATCCAAGGTCTTCTACCTCAAGATGAAGGGTGATTACTACAGGTACCGCGCCGAGTTTAAGACATCCGACCAGCGTAAGGAGTCTGCTGAGAGCACCTTAGCCGCTTACAAATCTGCCGAGGATATTGCTAATGCAGAACTTGCTCCAACTCATCCAATTAGGCTCGGTCTTGCTCTGAACTTCTCTGTCTTTTACTATGAAATTCTCAACTCTCCTGATCGTGCCTGCAAAATCGCAAAAGACGCTTTCGATGAAGCGATATCTGAATTGGATACCTTGGGAGAGGAATCATACAAGGATAGCACTTTGATCATGCAACTTCTTCGTGATAACCTCACCCTTTGGACCTCTGAGGTGGAGGATGATGCATCCACTACACCATTTTTCACTTTAGACCACGCTTAA 777 0.5058 MAAASTTREKYLYMAKLAEEAEAYDEMVEFMEKVYAAADNEDEELTVEERNHFSVAYKNVMNTKRASWRVIASKEGKEESLGNEDHLDNIREFRYMVESHLCNICDDVLNLLDSRLIPSASSAESKVFYLKMKGDYYRYRAEFKTSDQRKESAESTLAAYKSAEDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACKIAKDAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSEVEDDASTTPFFTLDHA* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2538 258 PRINTS 14-3-3 protein zeta signature 93 117 IPR000308 -
Lja1g2538 258 PRINTS 14-3-3 protein zeta signature 159 185 IPR000308 -
Lja1g2538 258 PRINTS 14-3-3 protein zeta signature 124 146 IPR000308 -
Lja1g2538 258 PRINTS 14-3-3 protein zeta signature 213 242 IPR000308 -
Lja1g2538 258 PRINTS 14-3-3 protein zeta signature 186 212 IPR000308 -
Lja1g2538 258 PRINTS 14-3-3 protein zeta signature 44 73 IPR000308 -
Lja1g2538 258 ProSitePatterns 14-3-3 proteins signature 2. 222 241 IPR023409 -
Lja1g2538 258 Gene3D - 1 252 IPR036815 -
Lja1g2538 258 PANTHER 14-3-3 PROTEIN 4 245 IPR000308 -
Lja1g2538 258 PANTHER 14-3-3-LIKE PROTEIN 16R-RELATED 4 245 - -
Lja1g2538 258 Coils Coil 14 34 - -
Lja1g2538 258 PIRSF 14-3-3 2 250 IPR000308 -
Lja1g2538 258 Pfam 14-3-3 protein 14 240 IPR023410 -
Lja1g2538 258 SMART 1433_4 8 253 IPR023410 -
Lja1g2538 258 SUPERFAMILY 14-3-3 protein 7 242 IPR036815 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2538 Lja-Chr1 29506605 29509829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2538 5 248 14-3-3 family AT1G78300 74.590 4.16e-135 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2538 K06630 - gmx:100529128 377.481