Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2535 ATGTCACACTTCGAGGATATTCAATCTGTTATTATTGACAATGGAACGGCCATGATTAAGGCTGGTTTTGCAAGATATAGTGAGCCACATGCTGTGTTTCCCAGCATTGTTGCTGATGTTGAAAAGGATGCATATGTTGGCGATGAGGCGTTGTTTAAGTATGGTACTTCGCCTCTCAAGTACCCCATCAAGAATGGAGTTATAAACAATTGGGATGATATGGAAAAGATTTGGAGGCATACATTCGATAATGAGCTCCGTGTTGACCCAGAAGACCATCCGGTTCTGCTAACCGAGACTCCTTTTAACCTCAAGGCTAACCGTGAGAAGATGGCCCAAATCATGTTTGAGACTTTTAAGACCCCTTTTATGTATATACAAAATTGTGCCACTCTTTCACTGTATGCATATGGTCGCACTACTGGCCTTGTGTTCGATTCTGGTGATGGGGTTAGCCACATTTTCCCTGTGTTTGAGGGTTGTCCCCTTAAAGAGGGCATTAATAGTATTGATTTGGCTGGTTGTGACCTCACAAATTTCATGAAGAAAATTTTGACTGATCGTAAGTACTCTTTTAGCAGCTCAGCAGAGCGTGAAATTGTGAGGGACATGAAAGAAAAACTAGCTTACATTGCCCTTGACTATAACCAAGAGCTGAAAGCAAGTAAGGCAAGTTCTTTTGTGGAGAAGCGATATGAGTTGCCTGATGGAAAGGTGATCACCATTGGTGATGAGTGTTTCAGATGTCCAGAGTTGTTGTTCAAACCATCATTGATAAGAAGGGAAGAACCTGGCATTCATAAGGCAATATACAATTCCATAATGAAATGCGACGTTTATTTCAGGAAACACTTGTACAATAACATTCTCCTTTCAGGAGGAACAACCATGTTCCCAGGAATTGCTAATAGACTGAGCAAGGAAATTTCTTTAATAGCCCCCAAAAGTATGAAGATCAATGTTGAAGTGTTACCTGAAAGAATATACAGTGCCTGGATTGGTGGTTCTATCATGGCATCCTTGAAGGACTTCGATCAGATGTGGATTTCAAAGTTCGAATATGATGAATGTGGGGAATCAATTGTCAACAAAAGGTGCATATCAGCTGTTTGA 1113 0.4079 MSHFEDIQSVIIDNGTAMIKAGFARYSEPHAVFPSIVADVEKDAYVGDEALFKYGTSPLKYPIKNGVINNWDDMEKIWRHTFDNELRVDPEDHPVLLTETPFNLKANREKMAQIMFETFKTPFMYIQNCATLSLYAYGRTTGLVFDSGDGVSHIFPVFEGCPLKEGINSIDLAGCDLTNFMKKILTDRKYSFSSSAEREIVRDMKEKLAYIALDYNQELKASKASSFVEKRYELPDGKVITIGDECFRCPELLFKPSLIRREEPGIHKAIYNSIMKCDVYFRKHLYNNILLSGGTTMFPGIANRLSKEISLIAPKSMKINVEVLPERIYSAWIGGSIMASLKDFDQMWISKFEYDECGESIVNKRCISAV* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2535 370 PRINTS Actin signature 28 37 IPR004000 -
Lja1g2535 370 PRINTS Actin signature 76 94 IPR004000 -
Lja1g2535 370 PRINTS Actin signature 228 244 IPR004000 -
Lja1g2535 370 PRINTS Actin signature 107 120 IPR004000 -
Lja1g2535 370 PRINTS Actin signature 132 151 IPR004000 -
Lja1g2535 370 SUPERFAMILY Actin-like ATPase domain 139 366 IPR043129 -
Lja1g2535 370 Gene3D Actin; Chain A, domain 4 172 263 - -
Lja1g2535 370 Gene3D - 130 330 - -
Lja1g2535 370 PANTHER ACTIN 1 366 IPR004000 -
Lja1g2535 370 Gene3D - 10 361 - -
Lja1g2535 370 ProSitePatterns Actins signature 2. 348 356 IPR004001 -
Lja1g2535 370 PANTHER ACTIN-11 1 366 - -
Lja1g2535 370 CDD NBD_sugar-kinase_HSP70_actin 10 173 - -
Lja1g2535 370 Pfam Actin 6 366 IPR004000 -
Lja1g2535 370 SUPERFAMILY Actin-like ATPase domain 6 144 IPR043129 -
Lja1g2535 370 SMART actin_3 7 367 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2535 Lja-Chr1 29416408 29419329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2535 1 366 Cytoskeleton Gene Families AT3G46520 65.957 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2535 K10355 - gmx:100792119 495.738