Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2522 ATGGATGAGAAAATTAAGTCATCTCCTAACACATTGGTACAATGTCGAATATGCCATGATGAAGATGAAGATTCAAACATGGAAACACCTTGTTCTTGTTGTGGCACCTTGAAGTACGCACATAGAAAATGTGTCCAAAGATGGTGCAATGCGAAAGGTGATAATACCTGTGAGATTTGCCAACAGCAACTTAAGGGCTACGTTGCACTTCCACCAGCTCCTTTGTTTCATTTTGGTGGTTCTCCAATAAATTTTGGAGAGACTACTAGAATGGATCTTCATAATCATCAGTTTATAGCAATGTTTACTACTAATCATGAGTTCACAGACCCTGACTTTGAATATTCAGCCCCCTCTACAAGGAGCCTGATATGCTACCGCATCATTGCCATCATTTTTCTTGTTCTTCTTGTTTTACGCCATACACTTCCAATCATATTTATACTCAGTGGAGCAGAAGGGTATTCATTGACAGTGTCTACGTTAATTGTGTTGAGAATCATTGGAATGCTTGTACCAGTGTATATAATGGTTAAAGCTATTATTTCGATCCAACGGCTTCAGTTTGTGCATGAGGATCATCACTCTCCTATGCAATCTCATGAGGAAAATGGCATGGAGGGGCAGTCTCAGTTGCGTGTCATTCAGATTCAGTGA 657 0.3988 MDEKIKSSPNTLVQCRICHDEDEDSNMETPCSCCGTLKYAHRKCVQRWCNAKGDNTCEICQQQLKGYVALPPAPLFHFGGSPINFGETTRMDLHNHQFIAMFTTNHEFTDPDFEYSAPSTRSLICYRIIAIIFLVLLVLRHTLPIIFILSGAEGYSLTVSTLIVLRIIGMLVPVYIMVKAIISIQRLQFVHEDHHSPMQSHEENGMEGQSQLRVIQIQ* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2522 218 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Lja1g2522 218 SMART ringv_2 14 61 IPR011016 GO:0008270
Lja1g2522 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 69 IPR013083 -
Lja1g2522 218 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 2 209 - -
Lja1g2522 218 CDD RING_CH-C4HC3_MARCH 15 61 - -
Lja1g2522 218 SUPERFAMILY RING/U-box 12 64 - -
Lja1g2522 218 Pfam Protein of unknown function (DUF3675) 66 181 IPR022143 -
Lja1g2522 218 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Lja1g2522 218 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 2 209 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2522 Lja-Chr1 29230712 29233797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2522 14 61 C3H Transcription Factor Family AT2G37950 50.980 1.32e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2522 - - lja:Lj1g3v3244520.2 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2522 1 29230712 29233797 Lja1g2522 1 29230712 29233797 ECH