Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2521 ATGGCGTTACAGAACATTGGTGCTGGTAATCGCGACGATGCCTTCTATAGGTATAAGATGCCTAGAATGATTACCAAAATTGAGGGTAGAGGTAACGGCATCAAAACAAATGTTGTCAACATGGTTGATATAGCAAAGGCATTGGCGAGGCCAGCGGCTTACACTACCAAGTATTTCGGTTGTGAACTTGGAGCCCAGTCGAAATTTGATGAGAAGACTGGAACTTCTCATGTCAATGGTGCACATGATACTGCAAAACTTGCTGGCCTCCTTGAGAATTTCATTAAGAAATATGTCCAATGCTATGGCTGTGGAAATCCTGAGACTGAGATATTGATTACTAAGAGTCAAATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCTGATGTGGATATGAGAGACAAGCTAACTACCTTCATCATAAAGAACCCTCCTGAGAGTAAGAAGGGATCCAAAGACAAGAAGGCCATGAGAAGAGCTGAGAAGGAGAGACTGAAAGAAGGTGAAGCAGCTGATGAGGAGCTCAAAAAACTGAAGAAAGAGGTTAAGAAGAAAGGCACTTCGTCTTCTAAGGATGGCACCACCAAATCTAGCTCTTCAAGGAAAAAGGCAAATGGCTCTGATGAGGACCGTACATCTCCTACTCATAGTCAAATTGATGAGAAGGATGTTGCTCATGAGGAAGACGAAGAAGATGATGATGATGATGTTCAGTGGCTAGCTGATACATCAGCAGAGGCTGCTCGTAAACGTATCCAAGAGCAGTTAAGTGCTGTGACAGCTGATATGGTCATGCTCACCACAAATGAACCAGAGAAGGAGAAAGTAGCAACTAAGTTAAGTGATAACGCTGAGAATGGTAGCTCCACAAATGGTAAATCTGAGAAAGCAGCAACTAAGGTAAATGACACTTCTGAGAATGGTGGCTCCATGCACTATAGCAAACTGGTTGGGGAAGTCAAAGCAGATTTGAAGAAAGGTGCTACTGCAAAAGAATTGCTGACCCATCTGGCAACACTTCCTGCATCTGCTCAAGAAAAAATGAGTGCTCTGTATGAAGCCCTGTTTGAGGGCACTGAGAAAGGGTTCGCGAAAGTAGCAATTAAGAGGAAGAGCTACCTTGCTGCTGCAGTTTCTCAGGAGGAGGGTATGCAGTTGCCATTGCTGCATGCAATTGAGGAATTTTCCTGCAAGTCCACTTCCAATGCGTTGAAGGAGGTTGCCCTGGTTCTGAAGGCGCTCTACGATGCTGATGTTTTGGAGGAAGAGCACATAGTTCAGTGGTACCAGAAAGGGCTCAAAGGCGATAACAAGGACTCTCAGATTTGGAAGAATGTTAAGCCTTTTGTTGACTGGCTTCAGAGTGCAGAGTCAGAATCAGAGGAAGAGTAA 1398 0.4428 MALQNIGAGNRDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEILITKSQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPESKKGSKDKKAMRRAEKERLKEGEAADEELKKLKKEVKKKGTSSSKDGTTKSSSSRKKANGSDEDRTSPTHSQIDEKDVAHEEDEEDDDDDVQWLADTSAEAARKRIQEQLSAVTADMVMLTTNEPEKEKVATKLSDNAENGSSTNGKSEKAATKVNDTSENGGSMHYSKLVGEVKADLKKGATAKELLTHLATLPASAQEKMSALYEALFEGTEKGFAKVAIKRKSYLAAAVSQEEGMQLPLLHAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKDSQIWKNVKPFVDWLQSAESESEEE* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2521 465 Gene3D - 105 145 - -
Lja1g2521 465 ProSiteProfiles W2 domain profile. 308 465 IPR003307 GO:0005515
Lja1g2521 465 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 1 465 - -
Lja1g2521 465 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Lja1g2521 465 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Lja1g2521 465 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Lja1g2521 465 SUPERFAMILY ARM repeat 316 459 IPR016024 -
Lja1g2521 465 Coils Coil 167 187 - -
Lja1g2521 465 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Lja1g2521 465 Pfam eIF4-gamma/eIF5/eIF2-epsilon 387 465 IPR003307 GO:0005515
Lja1g2521 465 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 465 IPR045196 GO:0003743|GO:0006413
Lja1g2521 465 Gene3D - 311 465 - -
Lja1g2521 465 MobiDBLite consensus disorder prediction 271 314 - -
Lja1g2521 465 MobiDBLite consensus disorder prediction 283 313 - -
Lja1g2521 465 MobiDBLite consensus disorder prediction 144 238 - -
Lja1g2521 465 MobiDBLite consensus disorder prediction 148 225 - -
Lja1g2521 465 CDD W2_eIF5 315 458 - -
Lja1g2521 465 Gene3D - 3 104 - -
Lja1g2521 465 SMART 542_3 373 461 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2521 Lja-Chr1 29224080 29227126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2521 1 458 Eukaryotic Initiation Factors Gene Family AT1G36730 63.090 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2521 K03262 - gmx:100777906 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2521 1 29224080 29227126 Lja1g2521 1 29224080 29227126 ECH