Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2520 ATGGCCTTGCAGAATATTGGTGCTGCAAACAGTGATGATGCCTTCTATAGGTATAAGATGCCTAGAATGATTACAAAAATTGAGGGTAGAGGTAATGGCATCAAAACAAATGTTGTCAACATGGTTGATATAGCAAAGGCATTGGCCAGGCCAGCGGCTTACACGACGAAGTATTTCGGTTGTGAACTTGGGGCTCAGTCGAAATTTGATGAGAAGACTGGAACTTCTCATGTCAATGGTGCACATGATACTGCAAAGCTTGCTGGTCTTCTTGAGAACTTCATTAAGAAATATGTCCAATGCTATGGCTGTGGAAATCCTGAGACCGAGATATTGATTACTAAGAATCAAATGATCCAGCTGAAATGCGCTGCTTGTGGTTTTTTGTCGGATGTGGATATGAGAGACAAGTTAACCACCTTCATTGTTAAGAACCCTCCAGAAAATAAGAAGGGATCCAAAGACAAGAAGGCCATGAGAAGAGCTGAGAAGGAGAGACTGAAGCAAGGTGAAGCTGCTGACGAGGAACTGAAAAAAGTGAAGAAAGAGGTTAAGAAGAAAGTCTCTTCAAAGGATGGACCCACAAAATCTACCTCTTCAAAGAAGAAAGCAAATAGCTCTGATGAAGAGCGTACTTCACCTACACACAGTCATATTGATGAGGAAGAGGAGGCTCATGATGAAGATGATGATGATGTGCAATGGCTAGCTGATACATCTGCAGAGGCTGCTCGGCAACGTATCCAAGAGCAGTTAAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACAAATGAAACAGAGGAGAAGAAAAAAGCAGGAAGCAAGGCAGATAATGGTTCTGAGAATGGAAACAAGGCACATAATGGTTCTGAGAATGGAAACTCAACCAACTACACAACACTGGTTGGTGAAGTGAAAGCTTATTTGAAGAAAGGTGTTTCAGCAAAGGAATTACTGTCTCATTTGGCAACGATTTCTGTATCTGCTCAGGAAAAGATGAGTGCTTTGTTTGAAGCCCTTTTTGATGGAATTGAGAAAGGTTTTGCAAAAGAAACTATCAAGAGGAAGAGCTACCTTGCTGCTGCGGTTGCTGAGGAAGAGGGATCCCAGTTGTTACTGCTTCATGCTATCGAGGAATTTTCTTGCAAGTCTGCTTCCAGTGCTCTGAAGGAGGTTGCCCTGATTCTGAAAACACTCTATGATGCTGATGTGTTGGATGAAGACAATATCGTGCAGTGGTATCAAAAAGGGCTGAAAGGTGATGACAAGAACTCTGTGATTTGGAAGAATGTTAAGCCCTTCATCGAGTGGCTTCAGACTGCGGAATCAGAGACTGAGGAAGAATGA 1350 0.4274 MALQNIGAANSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEILITKNQMIQLKCAACGFLSDVDMRDKLTTFIVKNPPENKKGSKDKKAMRRAEKERLKQGEAADEELKKVKKEVKKKVSSKDGPTKSTSSKKKANSSDEERTSPTHSHIDEEEEAHDEDDDDVQWLADTSAEAARQRIQEQLSAVTADMVMLSTNETEEKKKAGSKADNGSENGNKAHNGSENGNSTNYTTLVGEVKAYLKKGVSAKELLSHLATISVSAQEKMSALFEALFDGIEKGFAKETIKRKSYLAAAVAEEEGSQLLLLHAIEEFSCKSASSALKEVALILKTLYDADVLDEDNIVQWYQKGLKGDDKNSVIWKNVKPFIEWLQTAESETEEE* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2520 449 MobiDBLite consensus disorder prediction 143 232 - -
Lja1g2520 449 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Lja1g2520 449 SMART 542_3 357 445 IPR003307 GO:0005515
Lja1g2520 449 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 449 IPR045196 GO:0003743|GO:0006413
Lja1g2520 449 Gene3D - 105 145 - -
Lja1g2520 449 SUPERFAMILY ARM repeat 296 443 IPR016024 -
Lja1g2520 449 MobiDBLite consensus disorder prediction 265 298 - -
Lja1g2520 449 CDD W2_eIF5 302 447 - -
Lja1g2520 449 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 11 101 IPR016189 GO:0003743|GO:0006413
Lja1g2520 449 Pfam eIF4-gamma/eIF5/eIF2-epsilon 371 449 IPR003307 GO:0005515
Lja1g2520 449 ProSiteProfiles W2 domain profile. 289 449 IPR003307 GO:0005515
Lja1g2520 449 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Lja1g2520 449 Gene3D - 293 449 - -
Lja1g2520 449 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 1 449 - -
Lja1g2520 449 MobiDBLite consensus disorder prediction 278 298 - -
Lja1g2520 449 MobiDBLite consensus disorder prediction 148 222 - -
Lja1g2520 449 Gene3D - 2 104 - -
Lja1g2520 449 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2520 Lja-Chr1 29217985 29221007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2520 1 442 Eukaryotic Initiation Factors Gene Family AT1G36730 64.302 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2520 K03262 - gmx:100777906 689.108