Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2517 ATGGAAAATTCCCAATTCAAACCCAAAACCCTAAATCTAGACTCCACCCACTTGTTCCTCTCCGCTCTCCAATCCCTCCAACTCCCACCGCAAACCTCCTCCTCCACCACCACCACCGCCATTCCACACTCCAAACTCATCCCCAACACCCGCTTCCTCGTCGACGCCTTCCGCCACGGCAGCAGCGGCGGTGGTGGCTCCTTCTCCGTCGCCTACTTTCTCTCCCACTTCCACTCCGACCACTACGCCGGCCTCTCCCCTTCCTGGTCCCACGGCGTTGTCTTTTGCTCCCCCACCACCGCAGAACTCCTCCTCCACGTCCTCCGCGTCCCCTCCCCCTTCGTCCACCCTCTCCCCCTCAACCAACCCGTTTGTATTGATGGTTCCGTGGTCACCCTCATTGACGCCAACCACTGCCCTGGTGCTGTCCAGTTCCTCTTCGAGGTCCCCGCTCCCGACGGAACCTGCCGCAGGTATGTTCACACGGGAGATTTCCGGTTTTGTCGTTCGATGTTGGCTGAGCCTGCGCTTGCTCCTTTTGTTGGTGCCGATGCTGTGTTTTTGGACACCACTTACTGTCACCCGAAGTTTGTGTTTCCTGCACAAGAGGAGTCTGTTGATTATGTTGTTAATGTTGTGGGTGAGTGTGACGGTGATGATGTCTTGTTTCTGGTTGCTACTTATGTTGTTGGGAAGGAGAGGATTTTGCTTGAGCTTGCGCGAAGATTTAACAAGAAGGTGCTGGTGGATGCTAGGAAAATGGAGGTTTTGCGAGTTCTTGGGTATGGGGAAAGTAGTGAATTTACTGAGGATGGATTGGAGACTAACATTCATGTTGTTGGGTGGAATGTGTTGGGGGAAACTTGGCCCTATTTTAGGCCCAACTTTGTTAAAATGAAGGAGATTATGACCGAGAGAGGGTACTCAAAGGTTGTGGGTTTTGTGCCAACCGGATGGACCTATGAAGTGAAACGCAGTCGGTTTGCTGTCAAGTCCAAGGATTCGTGTCAGATTCATCTCGTTCCTTATAGTGAGCATTCAAACTATGAAGAGCTCAGGGAATATGTAAAGTTTCTGAAACCGAAGCAGGTTATTCCCACCGTGGGTTTAGATGTCGAGAAAAGTGATAGCAAACACGCTAACAAAATGAGGAAGTATTTTGCTGGATTAGTTGATGAGACAGCCAACAAGCAGGAGTTTTTAAAAGGTTTTCGTCGTGGCACCAGTGAAGTGGGTTTAAAGGGTGAGAAGGATGTTAGCGACGTTCTGGAACAAGGACAGATCCAGGAGAAAGAAGTCAAGCCATCTGATGCAGATGGGGAAACGTGTGCAAAAGATCCTACTTTACTAAATGATGAAGAAAAAGAGAAAATCATTCAAGAACTTAGTTGTTGTTTGCCCTCATGGGTCACTCGAAGCCAGGTGTTAGATCTGATCAGTATCTCAGGGAGCAATATTGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCATGATCAAGTAAATTCTAGTCAAACTTCAGTTTCAACATCCAAGTGCTGCTCATCAGATGACACTGATTCACTTCCAAAGTCATGCCTTAATACAAACAGTACTCCCTTAAATGTTGACATTTTTCCTAGTCAAGACTCTAAATTAACTAAACTGAGGAATACAGTACCAAGTCGCATTTCCCCTGCCAAAAGAAAAAGTAGTGAAAGTAAGCCAAACAAGAAAGTAAAAGTCAAAGCAAAATCAGAATCAAGTGGTTCAAAGCAGTCAACTATAACAAGATTCTTCGGCAAAGTAACGCCTGAGGTGCCTGGTGGGACTCATTCTGATCATGCTGGGTCAAAGCTTGATGAAAGTCCTAAAGTTGAAGAGTTGTTGCAATCTGATGTTGAAAAATTGTACAAGGATGAGATTGATCAGTTTATGCAAATAATAAATGGAAACGAGTCTTTAAAAAGAGATGCCATCACTATAATTAAAAAGGCAAAAGGAGATGTCAATAAGGCCTTAGACATATATTACTGCAATTCTGGCCATCTTGGTGAAAATGAAATATCAGCTCAAGAGGAGTGCAAAATCGACAGACCTTTAGAAAAGAAGTATGTGTCACAGGAAATGAGAGTTGTACATGATATTTCTGTGCAGAAAGTGTTAAGAAATAGTGTAGATGCAACTCATTTATCTTTACCACCTGAGAAATACAACCCTAAGGAACATGCTTGTTGGGGAGATGGACAGCCTGCGCCATATTTACATCTTGCACGAACCTTCAATCTGCTTGAGGAGGAGAAAGGAAAGATAAAAGCTACTTCAATGTTGTGCAATATGTTTAGAAGTTTGTTGGCCTTGTCACCAGCAGATGTGCTTCCTGCTGTGTATCTATGTACAAACAAAATTGCTGCAGACCATGAAAATGTGGAACTAAATATTGGTAGAAGTTTAGTCACTACAGCACTTGAAGAAGCATGTGGAACAAATCGATTGAAAATAGGGGAGATGTATAACAAATTTGGTGACCTTGGTGATGTGGCTCAAGAGTGTCGTCAAACACAGAGATTGCTTGCACCACCTACACCACTTCTAATTAAGGAAGTTTTCTCTGCACTACGAAAGATGAGTGTACAAACAGGCAATGGAAGCACAGTTCGGAAGAAAGGCATCATCGTTCATCTCATGCGGTCTTGCCGGGAGAAGGAGATGAAGTTTCTTGTTCGGACATTGGTCAGGAACTTACGGATTGGGGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGTTATGAATTCTCGTTCTACTGTGGATCAAGAAGGAACTGCAGATAATTTGAAGAATAAACTTCAGGTCCTTTCTGTGGAAGTTGTTGAAGCATATAATATTCTGCCAAGTTTGGATATCATAGTCCCATCTCTCATGAGCAAAGGCATTGATTTTTCGGTTTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAAGCCTATGCTTGCAAAGATCACCAATGGCATTCCCCAAGCATTGAAGCTATTTCAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCATATCCACAGATTAGTTGATGGTTCAATTCGTGTCTTTTCAAGAAATGGAAATGAATCAACTTCTAGATTTCCTGATCTGATTGACATAATTAAGCACTCCTGCAAGCCTGTTGCATCAACTTTCATAATTGATGCAGAGGTTGTTGGTATTGATAGAAAAAACGGAAACAGAATTATGTCTTTTCAGGAGCTATCTTCACGTGGGAGAGGAAGCAAAGATACTTTAGTTACTGCAGAGAGCATAAAGGTTGGAAATTAG 3342 0.4339 MENSQFKPKTLNLDSTHLFLSALQSLQLPPQTSSSTTTTAIPHSKLIPNTRFLVDAFRHGSSGGGGSFSVAYFLSHFHSDHYAGLSPSWSHGVVFCSPTTAELLLHVLRVPSPFVHPLPLNQPVCIDGSVVTLIDANHCPGAVQFLFEVPAPDGTCRRYVHTGDFRFCRSMLAEPALAPFVGADAVFLDTTYCHPKFVFPAQEESVDYVVNVVGECDGDDVLFLVATYVVGKERILLELARRFNKKVLVDARKMEVLRVLGYGESSEFTEDGLETNIHVVGWNVLGETWPYFRPNFVKMKEIMTERGYSKVVGFVPTGWTYEVKRSRFAVKSKDSCQIHLVPYSEHSNYEELREYVKFLKPKQVIPTVGLDVEKSDSKHANKMRKYFAGLVDETANKQEFLKGFRRGTSEVGLKGEKDVSDVLEQGQIQEKEVKPSDADGETCAKDPTLLNDEEKEKIIQELSCCLPSWVTRSQVLDLISISGSNIVEAVSNFYERETEFHDQVNSSQTSVSTSKCCSSDDTDSLPKSCLNTNSTPLNVDIFPSQDSKLTKLRNTVPSRISPAKRKSSESKPNKKVKVKAKSESSGSKQSTITRFFGKVTPEVPGGTHSDHAGSKLDESPKVEELLQSDVEKLYKDEIDQFMQIINGNESLKRDAITIIKKAKGDVNKALDIYYCNSGHLGENEISAQEECKIDRPLEKKYVSQEMRVVHDISVQKVLRNSVDATHLSLPPEKYNPKEHACWGDGQPAPYLHLARTFNLLEEEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTNKIAADHENVELNIGRSLVTTALEEACGTNRLKIGEMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKEVFSALRKMSVQTGNGSTVRKKGIIVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVVMNSRSTVDQEGTADNLKNKLQVLSVEVVEAYNILPSLDIIVPSLMSKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAHIHRLVDGSIRVFSRNGNESTSRFPDLIDIIKHSCKPVASTFIIDAEVVGIDRKNGNRIMSFQELSSRGRGSKDTLVTAESIKVGN* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2517 1113 Pfam DNA ligase N terminus 749 925 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lja1g2517 1113 MobiDBLite consensus disorder prediction 551 621 - -
Lja1g2517 1113 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 729 978 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lja1g2517 1113 Pfam DNA repair metallo-beta-lactamase 265 369 IPR011084 -
Lja1g2517 1113 Gene3D - 47 368 IPR036866 -
Lja1g2517 1113 Gene3D DNA ligase/mRNA capping enzyme 995 1111 - -
Lja1g2517 1113 MobiDBLite consensus disorder prediction 503 525 - -
Lja1g2517 1113 PANTHER DNA LIGASE 7 751 - -
Lja1g2517 1113 MobiDBLite consensus disorder prediction 564 582 - -
Lja1g2517 1113 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 7 751 - -
Lja1g2517 1113 SUPERFAMILY Metallo-hydrolase/oxidoreductase 49 369 IPR036866 -
Lja1g2517 1113 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 951 1089 - -
Lja1g2517 1113 Pfam ATP dependent DNA ligase domain 995 1102 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lja1g2517 1113 SMART Lactamase_B_5a 35 228 IPR001279 -
Lja1g2517 1113 Gene3D - 198 346 - -
Lja1g2517 1113 CDD SNM1A-1C-like_MBL-fold 41 195 - -
Lja1g2517 1113 MobiDBLite consensus disorder prediction 502 525 - -
Lja1g2517 1113 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1019 1027 IPR016059 GO:0003909
Lja1g2517 1113 Gene3D - 726 994 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2517 Lja-Chr1 29189144 29197952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2517 731 1112 Core DNA Replication Machinery Family AT1G08130 37.958 5.37e-79 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2517 - - lja:Lj1g3v3244630.2 1810.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2517 1 29189144 29197952 Lja1g2517 1 29189144 29197952 ECH