Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2500 ATGAAACCTCTGCTTCATCCATCTTCCATTTTAACTTTCTGGTTCACCCTTTTCATAATCTCAATCAATATTCAAACATCCCTCTGTGCTGATAATGATAGCAAGCACTACACGAACTGCGATGAAGCTTTTTCCTGCAATGGTAGCAGTGTTGGGAACCTCAAGTACCCATTCTGGGGAGGAAACAGAGCTGAGTACTGTGGTCAATCTCAGTTGGAGCTCGTTTGTGAAGACCGTGCAGCGAAGATCACAATCAATTCAATCACATACCGTGTTGTTAAATGGGAGGATTCAACACAGAAGCTCACGGTGGCTAGAGATGACTTCTGGGGTGGTGTCTGTGCTGTGAGTGATTACCAGAACAGTTCATTTGATAACTCTCCCTTTCAATATGATTTCAGTGGTGATAATAACGTGACGTTGTTATACAATTGCGGTTCTATCGATCCTCCGAGTGGGTTTTATAGGAGTTCCTGCGATGGTGGTAGTAGAGTTGTGTACTATATTGTAGGAGTAGGACCTTTATCCTTTGCCTCTGCTTGCACGAGTGTTGTGGTTCCAGTTTTGGCATCCCAAGTTTCAGCACTTGCATCTACTGCTGGTAACATAGACGAGGTATTGAATGAAGGTTTTGGATTGAGATGGAGTGGTAATTATCAAGAGTGCACAGGATGTCTTGATACTAGAGGAGCGTGTGGGTTTGATGGAAAATTCAGGTGTTTCTGCGAGGATGGACCTCATCAATCTTCATGCATTTCAGATAGGGCCCCAGCTCCAGATAAAAGGCGGGGGAGCACAACTCGTAACATTGTGATAGGTGTAGCGGCATCTTGTGTGGGAGGACTAGTCGCTATTATTAGTATAGCTATTTATATTAGGAGGAAGTTTAAGAGTTTATCTGGACAAACGATGATCTCCAGGAAAAGAAGTACATTTGTTGAACATGATGTGGAAGCTTTCATGCAAAGCTATGGTTCATTGGCACCAAGGCGATATAGTTATTCAGAAGTTAAAAGGATCACAAACTCATTTGTACATAAGCTAGGCCAAGGTGGATATGGCGTTGTGTACAAAGCAACATTACCTGATGGTCGTCTTGTTGCTGTAAAAGTGATAAGCGAATCCGGCGGGAGCGGAGAAGATTTCATAAATGAAGTTTCTAGCATTAGCAGAACTTCTCATGTGAACATTGTCTCACTCTTGGGATTTTGCTATGATAAAAACAGAAGAGTATTGATCTATGAATTCATGCCCAATGGTTCATTGGATAATTTCATCAATGGAATGGGATCTCCAAATGCTATTTGCTGTTTTGATTGGAATACTTTGTACAAAGTTGCAATCGGGATTGCTCGAGGGCTAGAGTACCTACATCAAGGATGCAATACAAGGATCTTACACCTTGATATCAAACCTCAAAACATTCTCTTGGATGAAGACCTTTGCCCAAAAATAGCTGATTTTGGACTAGCTAAAATATGCAAAAGGAAGGAGAGCATTGTGTCTATGTTGGGAACAAGAGGAACTCCCGGGTACATTGCACCAGAAGTATTTAGTCGAGCATTTGGTGGTGTTTCTCACAAATCTGATGTGTATAGCTTTGGCATGTTGATTCTTGAAATGGTTGGAGGAAGGAAAAATTATGATAGTGGTGGAGGGTCACAAAGCAGTGAAATGTTTTTTCCAGATTGGATATATAAGGATCTTGAGCAAGGTGATGTTCACACAAATTTTTTGGTCATCACAGAGGAGGAACATGAGATGGCAAGGAAAATGATTTTGGTCAGTCTTTGGTGCATCCAAACACGCTCATCGGAGAGACCATCAATGAATAAAGTGGTGGAGATGTTAGAAGGAACACTTGAGTCAGTGCCATATCCTCCAAAGCCTATCTTACATTCTCCTGAAAAGCTATTATTGCAAAATTCAGATTTAACTTCAGGCAATACTCTGGAGACAGATTCAATGACAACAGAAAAAGATGGTTCCATTGAATTGAATGTGTTAAGCAAGAATGTACCAGGTTAA 2028 0.4117 MKPLLHPSSILTFWFTLFIISINIQTSLCADNDSKHYTNCDEAFSCNGSSVGNLKYPFWGGNRAEYCGQSQLELVCEDRAAKITINSITYRVVKWEDSTQKLTVARDDFWGGVCAVSDYQNSSFDNSPFQYDFSGDNNVTLLYNCGSIDPPSGFYRSSCDGGSRVVYYIVGVGPLSFASACTSVVVPVLASQVSALASTAGNIDEVLNEGFGLRWSGNYQECTGCLDTRGACGFDGKFRCFCEDGPHQSSCISDRAPAPDKRRGSTTRNIVIGVAASCVGGLVAIISIAIYIRRKFKSLSGQTMISRKRSTFVEHDVEAFMQSYGSLAPRRYSYSEVKRITNSFVHKLGQGGYGVVYKATLPDGRLVAVKVISESGGSGEDFINEVSSISRTSHVNIVSLLGFCYDKNRRVLIYEFMPNGSLDNFINGMGSPNAICCFDWNTLYKVAIGIARGLEYLHQGCNTRILHLDIKPQNILLDEDLCPKIADFGLAKICKRKESIVSMLGTRGTPGYIAPEVFSRAFGGVSHKSDVYSFGMLILEMVGGRKNYDSGGGSQSSEMFFPDWIYKDLEQGDVHTNFLVITEEEHEMARKMILVSLWCIQTRSSERPSMNKVVEMLEGTLESVPYPPKPILHSPEKLLLQNSDLTSGNTLETDSMTTEKDGSIELNVLSKNVPG* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2500 675 Gene3D Phosphorylase Kinase; domain 1 316 416 - -
Lja1g2500 675 Gene3D Transferase(Phosphotransferase) domain 1 417 625 - -
Lja1g2500 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Lja1g2500 675 PANTHER RUST RESISTANCE KINASE LR10-RELATED 19 657 IPR045874 GO:0004672
Lja1g2500 675 Pfam Protein kinase domain 345 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2500 675 SUPERFAMILY Protein kinase-like (PK-like) 322 618 IPR011009 -
Lja1g2500 675 Pfam Wall-associated receptor kinase galacturonan-binding 40 105 IPR025287 GO:0030247
Lja1g2500 675 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Lja1g2500 675 PANTHER TYROSINE KINASE FAMILY PROTEIN 19 657 - -
Lja1g2500 675 SMART serkin_6 342 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2500 675 ProSiteProfiles Protein kinase domain profile. 342 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2500 675 Pfam Wall-associated receptor kinase C-terminal 177 245 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2500 Lja-Chr1 28944374 28947478 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2500 11 643 Receptor kinase-like Gene Family AT1G66910 40.361 7.24e-147 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g2500 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2500 - - lja:Lj0g3v0196349.1 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2500 1 28944374 28947478 Lja1g2500 1 28944374 28947478 ECH