Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2497 ATGAAACCTCTGCTTCATCCATCTTCCATTTTAACTTTCTGGTTCACCCTTTTCATAATCTCAATCAATATTCAAACACCCCTCTGTGCTGATAATGATAGCAAGTACTACACGAACTGCTATGAAGCTTTTTCCTGCGATGGTAGCAGTGTTGGGAACCTCAAGTACCCATTCTGGGGAGGAAACAGAGCTGAGTACTGTGGTCAATCTCAGTTGGAGCTCGTTTGTGAAGACCGTGCAGCGAAGATCACAATCAATTCAATCACATACCGTGTTGTTAAATGGGAGGATTCAACACAGAAGCTCACGGTGGCTAGAGATGACTTCTGGGGTGGTGTCTGTGCTGTGAGTGATTACCAGAACAGTTCATTTGATAACTCTCCCTTTCAATATGATTTCAGTGGTGATAATAACGTGACGTTGTTATACAATTGCGGTTCTATCGATCCTCCGAGTGGGTTTTATAGGAGTTCCTGCGATGGTGGTAGTAGAGTTGTGTACTATATTGTAGGAGTAGGACCTTTATCCTTTGCCTCTGCTTGCACGAGTGTTGTGGTTCCAGTTTTGGCATCCCAAGTTTCAGCACTTGCATCTACTGCTGGTAACATAGACGAGGTATTGAATGAAGGTTTTGGGTTGAGATGGAGTGGTAATTATCAAGAGTGCACAGGATGTCTTGATACTAGAGGAGCGTGTGGGTTTGATGGAGAATTCAGGTGTTTCTGCACGGATGGACCTCATACATCTTCATGCATTTCAGAGACTGCCCCAGCTCCAGGTAAAGGCGGTTCTACCAAAGTAGGCGTTATAATAGGTGTTGCTGCAGGAGTTGCAGTCCTTGTTGGCCTTCTTTGCTGTGGGTTCTTTATGTTCCGACGAAAGAGAAAAATGGCTAAGCAATCAACAGGCAAGGACCTCCTCATGCCTACTACTACTTCAAGGCCAAGCAGTTTCACTCTCACCTCTGCCACTAACTCTTCTCAAAGTGTCTCTTCTTACCCCTCTTCCACGTCTGGCACAGTGCCTCCCAAAAGTTTCTACTTTGGCGTCAAGGTGTTTACCTATGAAGAACTAGAGGAAGCTACAAACGGTTTTCACACTTCCAGAGAACTTGGTGAAGGAGGTTTTGGCACAGTTTACAAAGGTGAACTCCAAGATGGACGTGTGGTTGCCGTGAAACGCCATTATGAAAGCAATTTTAAACGTGTTGAGCAGTTCATAAATGAAGTTAGGATTCTAGCTACCTTACGGCACAAGAACCTGGTGACACTCTATGGATGCACCTCTAGACATAGCCGAGAGCTTCTCCTTGTCTATGAATTCATATCTAATGGAACAGTGGATGATCATCTTCACGGGAAACGGTCGAAGTCCGCTTTACTTCCTTGGCCTGTCCGATTGAACATTGCAGTAGAAACAGCTGAAGCACTAGCCTACCTCCATGCAAATGATGTCATACACCGCGATGTTAAATCCAACAACATCCTCTTAGATGATAAATTTCATGTTAAGGTTGCTGATTTTGGTCTCTCGCGGTTGTTCCCCACTCATGTCACTCATGTGTCAACTGCTCCACAAGGAACACCTGGTTATGTTGACCCTGAGTATTATCAGTGCTACCAACTCAATGATAAGAGTGATGTTTACAGCTTTGGGGTTGTCTTAGTTGAGCTCATATCATCATTACAAGCTGTGGACGTTAGCCGGCACCGCAGTGACGTGAACTTGGCGAACATGGCCATCAATAAAATTCAGAACCAAGAATTACATGAGTTGGTGGATTTGGATCTTGGATTTGAAAAGGACGATGGTGTGAGGAGGATGATGACAGGAGTGGCGGAATTAGCCTTTCGATGTTTGCAACAGCAGAAAGAAATGAGGCCCAACATGGATGAGGCGGTGGAAATCTTGAGAGCAATCAAGAGTGATGAGCTTGACACAAGGGAAGCAAAAGTAGTGGATGTTGTGACAGATGAAGTTGTGCTTCTGAAGAAGGTTCCTTCACCAGTTTCACCAGATTCAGTTGCTGATAAATGGGTTAGCAGCTCTACTGCATCTAATTCCTTATAG 2070 0.4459 MKPLLHPSSILTFWFTLFIISINIQTPLCADNDSKYYTNCYEAFSCDGSSVGNLKYPFWGGNRAEYCGQSQLELVCEDRAAKITINSITYRVVKWEDSTQKLTVARDDFWGGVCAVSDYQNSSFDNSPFQYDFSGDNNVTLLYNCGSIDPPSGFYRSSCDGGSRVVYYIVGVGPLSFASACTSVVVPVLASQVSALASTAGNIDEVLNEGFGLRWSGNYQECTGCLDTRGACGFDGEFRCFCTDGPHTSSCISETAPAPGKGGSTKVGVIIGVAAGVAVLVGLLCCGFFMFRRKRKMAKQSTGKDLLMPTTTSRPSSFTLTSATNSSQSVSSYPSSTSGTVPPKSFYFGVKVFTYEELEEATNGFHTSRELGEGGFGTVYKGELQDGRVVAVKRHYESNFKRVEQFINEVRILATLRHKNLVTLYGCTSRHSRELLLVYEFISNGTVDDHLHGKRSKSALLPWPVRLNIAVETAEALAYLHANDVIHRDVKSNNILLDDKFHVKVADFGLSRLFPTHVTHVSTAPQGTPGYVDPEYYQCYQLNDKSDVYSFGVVLVELISSLQAVDVSRHRSDVNLANMAINKIQNQELHELVDLDLGFEKDDGVRRMMTGVAELAFRCLQQQKEMRPNMDEAVEILRAIKSDELDTREAKVVDVVTDEVVLLKKVPSPVSPDSVADKWVSSSTASNSL* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2497 689 Pfam Wall-associated receptor kinase galacturonan-binding 45 105 IPR025287 GO:0030247
Lja1g2497 689 Pfam Protein kinase domain 365 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2497 689 MobiDBLite consensus disorder prediction 669 689 - -
Lja1g2497 689 Gene3D Transferase(Phosphotransferase) domain 1 442 655 - -
Lja1g2497 689 Pfam Wall-associated receptor kinase C-terminal 177 245 IPR032872 -
Lja1g2497 689 ProSiteProfiles Protein kinase domain profile. 365 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2497 689 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 688 IPR044652 -
Lja1g2497 689 ProSitePatterns Protein kinases ATP-binding region signature. 371 393 IPR017441 GO:0005524
Lja1g2497 689 Gene3D Phosphorylase Kinase; domain 1 342 441 - -
Lja1g2497 689 MobiDBLite consensus disorder prediction 675 689 - -
Lja1g2497 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Lja1g2497 689 MobiDBLite consensus disorder prediction 302 340 - -
Lja1g2497 689 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 8 688 - -
Lja1g2497 689 SUPERFAMILY Protein kinase-like (PK-like) 344 643 IPR011009 -
Lja1g2497 689 SMART serkin_6 365 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2497 689 MobiDBLite consensus disorder prediction 304 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2497 Lja-Chr1 28894782 28902965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2497 53 688 Receptor kinase-like Gene Family AT1G25390 41.616 4.46e-150 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lja1g2497 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2497 - - cam:101490779 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2497 1 28894782 28902965 Lja1g2497 1 28894782 28902965 ECH